Strawberry lethal yellows phytoplasma (CPA): SLY_0419
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Entry
SLY_0419 CDS
T02674
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SLY_0419 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nzs03021
]
SLY_0419 (sigA)
Transcription machinery [BR:
nzs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SLY_0419 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
LepB_N
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AGL90339
UniProt:
R4S0L2
LinkDB
All DBs
Position
complement(351029..352495)
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AA seq
488 aa
AA seq
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MREKIKNKGRLKMDFKEAIRILNNKIGQNKEITFQTIRSCFEEQNSDLFYQQIENELKKQ
GVKVVSSSNQNFLYQNECQPTADTFLKDDFEGAQELEEISNPNFSSNENEYPIDEKNLLA
ADFQETEIPEPSNLSNDFIANDSKLDEDLDLDFDPDLEIDPEDDKFSKENITKINSDIKI
DDSVRMYLKEIGRIPLLSKEEEQKKTFAVFLGKEAKKKLTKFRNQEIDLSDQEVKQLESQ
IIQANQAKDVLVESNYRLVVSIAKRYIGRGVLFLDLIQEGNMGLMRAVDKFDYQKGLRLS
TYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSLCTRKLTQELKKKPTIEELAEKMN
IPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFISDPNVLSPHEYMMKEVTQKLLDE
VLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGVTRERIRQIESKALRRLRTPAKQS
KLKSLYQN
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
ttgagagaaaaaataaaaaataaaggtaggttaaaaatggattttaaggaagctattaga
attttaaataataaaataggccaaaacaaagaaataacttttcaaactattcgctcttgc
tttgaggagcaaaattcagatcttttttatcaacaaattgaaaatgaattaaaaaagcaa
ggagttaaagttgtttcttcttctaaccaaaattttttatatcaaaatgaatgtcaacct
actgcagatacttttttaaaagatgattttgaaggtgcgcaagaattagaagaaattagc
aatccaaatttttcctcaaatgaaaatgaatacccaatcgatgaaaaaaatttgttagct
gctgactttcaagaaacagaaattcctgaaccatcaaatctttctaatgattttatcgca
aatgactctaaattagatgaagacctagatttagatttcgatccggatttagaaatagat
cctgaggatgataaattttctaaagaaaatatcaccaaaattaattctgatattaaaata
gatgactctgtgagaatgtatttaaaggaaatcggtcgtattcctttgctttccaaagaa
gaagaacagaaaaaaacctttgcagtttttttaggaaaagaagcgaaaaaaaaattaact
aaattccgcaatcaagaaattgatttatcagatcaagaagttaaacaattagaatctcaa
attattcaagctaatcaagccaaagatgttttagtagaatcaaattatcgtttggtagtt
tcgattgctaaacgttatattggtcgtggagttttatttctagatttgattcaagaagga
aatatgggattaatgcgtgctgttgacaaatttgattatcaaaaagggttgagactttca
acttatgccacttattgggttatccaaggtgtcacaagagcaatcgctgatcaagcaaga
accattagaatacctgttcatattgttgaaactattaataaaatgtctctttgtacgaga
aaattaacccaagaattaaagaaaaaacctacaatcgaagagttagctgaaaaaatgaat
atacctgctgacaaattaagaagcattcaatatattgaaaaaaaaccgatttccttagaa
gttccaccagctgaaaataaagaagatgaaacctctttgggtgatttcatttcagaccct
aatgttttatcgcctcatgaatatatgatgaaagaagtgactcaaaaacttttagatgaa
gttttagaaaacactttaactgaacgcgaagaaaaagttttaaaaatgcgttacggtttt
cttgatggaaaagtttatactttagaagaaattggcaatttgttcggtgttactagagaa
agaattcgccaaattgaatccaaagccttaagacgtttaagaaccccagctaaacaaagt
aaattaaaaagtttatatcaaaactaa
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