Strawberry lethal yellows phytoplasma (CPA): SLY_0446
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Entry
SLY_0446 CDS
T02674
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nzs03032
]
SLY_0446 (topA)
03400 DNA repair and recombination proteins [BR:
nzs03400
]
SLY_0446 (topA)
Enzymes [BR:
nzs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SLY_0446 (topA)
DNA replication proteins [BR:
nzs03032
]
Prokaryotic type
DNA Topoisomerases
SLY_0446 (topA)
DNA repair and recombination proteins [BR:
nzs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SLY_0446 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGL90366
UniProt:
R4RPF9
LinkDB
All DBs
Position
complement(375266..377233)
Genome browser
AA seq
655 aa
AA seq
DB search
MKKKVIIVESPAKIKTLSRFFDDKVEILSSKGHIRDLSLSGKDRLGIDIKNGFIPKYEII
KEKKTLVESLIKKTKNKEIFLATDPDREGEAIAWHLSKVLNLNPQMANRIVFREITKEVV
LKALQNPRTVDELLVFSQETRRMLDRIIGFKLSRLVRRIKSQSAGRVQSVALKLIVDLEK
EINSFVPEEYNLITAFFPFFQAEYQNPNNKKIKSAEALGIVAKITNKPFIVKKIKQTETF
SKPKKPLITSTLQQEAINNLYMTSNQTMRVAQKLYEGIDIEGESIGLITYMRTDSPRFSE
VFVKDAQKLIKEKYGQKYLAVFKQNQKNKAQDAHEAIKPTDLSKTPESLMSYLDKYEYKL
YDLIYKRSLASLMKPAIFQKNQVFFEVEKHSFLTEGLIKTFDGYQKILKDNLQDKIIPTF
NLNESYFPEKIETFQKFTTPQARFSEATLIKTLEKLNIGRPSTYSQIIFTLKKRFYVDMI
EKRFQPTEQGILTIQNLELFFKQFLDYQYTAQMEADLDKIASGLVDNKQLMQTFYTNFLQ
LYQIADQKLEKIKPIETDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNTSPWKVQEKN
KSKDSDHSNQTDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKANSK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaaagttattatagttgagtctcctgccaaaattaaaacattaagccgtttt
tttgatgataaagtggaaattttatcttccaaaggtcatattagagatttatctttatca
ggaaaagatagacttggaattgacattaaaaatggttttattcctaaatatgaaattatt
aaagaaaaaaaaactttagttgagtctttgattaaaaaaaccaaaaataaagaaattttt
ttagcaactgaccccgatagagaaggtgaagcgattgcttggcatttatcaaaagttttg
aatttaaatcctcaaatggctaatagaattgtttttcgtgaaatcactaaagaagtagtt
ttaaaagctttgcaaaatcctcgtacagttgatgaattattagttttttctcaagaaact
agaaggatgcttgaccgtattatcggatttaagttgtcacgcctagttagaagaattaaa
tctcagtctgcaggaagagttcaatcggttgctttaaaattaattgttgatttagaaaaa
gaaattaattcttttgttcctgaagaatacaatctaattactgctttttttccatttttc
caagccgaataccaaaaccctaataacaaaaaaattaaatctgcagaagctttaggcatt
gttgcaaaaataaccaacaaaccttttatagtcaaaaaaatcaaacaaacagaaacattt
tctaaaccaaaaaaaccattgattacttcgactttgcaacaagaagcaattaataattta
tatatgacttctaatcaaacaatgagagtagctcaaaaactttatgaagggattgatatt
gaaggagaatccattggattaatcacttatatgcgtactgattctcctaggttttcagaa
gtatttgtaaaagatgctcaaaaattaattaaggaaaaatatggtcaaaaatatttagca
gtttttaaacaaaatcaaaaaaacaaggcccaagatgctcatgaagcaattaagcctacg
gatttatcaaaaacaccagaaagtttaatgtcatatcttgataaatatgaatataaactt
tatgatcttatttacaaaagatcattggcaagtttgatgaaaccggctatatttcaaaaa
aaccaagttttttttgaagttgaaaaacattcttttttaactgaagggttaattaaaaca
tttgatggttatcaaaaaattttaaaagacaaccttcaagacaaaattattccaactttt
aatttaaatgaaagttattttcctgaaaaaatagagacttttcaaaagtttactactcca
caagctcgattttctgaagccactttaattaaaactttagaaaaactgaacattggaagg
ccttccacttattcgcaaattatttttactctcaaaaaaagattttatgttgatatgatc
gaaaaacgttttcaacccacagaacaaggcattttaaccattcaaaacttagaacttttt
tttaagcaattccttgattatcaatatacggcacaaatggaggccgatttagataaaatt
gcttcaggattagtagataataaacaattaatgcaaactttttatacaaattttttgcaa
ctttatcaaatagcagatcaaaaactcgaaaaaataaaacctattgaaaccgatcaaaaa
tgtaatttatgtaatgaaggtaatttattaattaaaaaaagtcgttatggttcgtttttg
ggttgcagccgttttcctgattgcaaaaacacttctccttggaaagttcaagaaaaaaat
aaatcaaaagattccgatcattcaaaccaaaccgatcaaaaatgtaatttatgtaatgaa
ggtaatttattaattaaaaaaagtcgttatggttcgtttttgggttgcagccgttttcct
gattgcaaaaacattgttaaaataaaaaataaagcaaatagcaaataa
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