KEGG   Strawberry lethal yellows phytoplasma (CPA): SLY_0541
Entry
SLY_0541          CDS       T02674                                 
Symbol
rnhC
Name
(GenBank) Ribonuclease HIII
  KO
K03471  ribonuclease HIII [EC:3.1.26.4]
Organism
nzs  Strawberry lethal yellows phytoplasma (CPA)
Pathway
nzs03030  DNA replication
Brite
KEGG Orthology (KO) [BR:nzs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SLY_0541 (rnhC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nzs03032]
    SLY_0541 (rnhC)
Enzymes [BR:nzs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.4  ribonuclease H
     SLY_0541 (rnhC)
DNA replication proteins [BR:nzs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    RNase H
     SLY_0541 (rnhC)
SSDB
Motif
Pfam: RNase_HII DUF3378
Other DBs
NCBI-ProteinID: AGL90460
UniProt: R4RMD8
LinkDB
Position
complement(470963..471868)
AA seq 301 aa
MSHFTLKLNSDQFMVIQKYYQKELQTQSNSKTIAFFVKSDKNMITVYRNGTLLVQGSDAF
SKILFLQKLLQTKPLNEKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQK
KIFLSESKQMLDKNIIQTVPLIMDKVIKTIVTIKPSKYNKLIVNNNLNKIKALMHNLSIL
QTVEKINKAVPVILDQFCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYY
FLKKMNQLNHQLDCKLYLGAGERVDRQIASIVEKHGNSILKNIAKCNFKNITHKFQKYLT
K
NT seq 906 nt   +upstreamnt  +downstreamnt
atgtcacatttcactttaaaattaaattcagaccagtttatggtaattcaaaaatattac
caaaaagagttgcaaacgcaaagcaattccaaaactattgctttttttgtcaaaagcgat
aaaaatatgataactgtttatcgcaacggcactttattggttcaaggttcagatgctttt
tctaaaattctttttttgcaaaaattattacaaacaaagccattaaatgaaaaaaaaaac
acaaaatcttattatttagaatcgattggctctgatgaagtaggaactggagatgttttt
ggccctattatagtttgttctgtttatattcctcctcaaaacattacttttttccaaaaa
aaaatttttctttctgaatcaaaacaaatgttagataaaaacattatccaaactgttcct
ttaattatggataaagttattaaaacgattgtcacaataaaaccaagcaaatacaataaa
ttgattgtcaacaacaatttaaacaaaattaaagctttaatgcataatttatctattctt
caaactgttgaaaaaattaacaaagccgtgcctgttattttagatcaattttgtttaccc
aaattatattttaattatttaaaagatgaaacatctgtttatcaaaaaatcaattttcaa
acaaaagcagacagcaattatttaagcgttgctgttgcatctcttattgctagatattat
tttttgaaaaaaatgaatcaattaaaccatcaattagattgcaaattatacttaggggca
ggcgaaagggtggatcggcaaattgcttcaattgtcgaaaaacacggaaattcaatttta
aaaaacattgccaaatgcaattttaaaaatattacccataaatttcaaaaatatttaaca
aaataa

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