Strawberry lethal yellows phytoplasma (CPA): SLY_0900
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Entry
SLY_0900 CDS
T02674
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase srmB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Pathway
nzs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLY_0900 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nzs03019
]
SLY_0900 (srmB)
03009 Ribosome biogenesis [BR:
nzs03009
]
SLY_0900 (srmB)
Enzymes [BR:
nzs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SLY_0900 (srmB)
Messenger RNA biogenesis [BR:
nzs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SLY_0900 (srmB)
Ribosome biogenesis [BR:
nzs03009
]
Prokaryotic type
rRNA helicases
SLY_0900 (srmB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Cas3-like_C_2
PyrI
Motif
Other DBs
NCBI-ProteinID:
AGL90815
UniProt:
R4RN74
LinkDB
All DBs
Position
complement(774750..776498)
Genome browser
AA seq
582 aa
AA seq
DB search
MSKNILYFYLYNSKKERNEEIMNILFEQLPILEQTKKALQELNFIEATPIQALVIPEIIQ
GHDVIGQAQTGTGKTFAFGIPIIEKIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYP
QIRIAVVFGGESYTKQFRALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEML
KMGFQEALETILKQIPEERQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQ
YYFLVKEFDKNKLLVRLLDLKRDYSTILFANTKKDVDEIASFLQDKGFLADAVHGDLKQN
QRQYVMNNFRKGKIKILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKK
GLAYSFISPRKFSQLKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQEN
ANNPMIEKLLQKFSSEQIIQGLLTNIQPKAKNYTDIIPPRMTFTPRETFNNNSFGNRRFG
EKRFQNPKFSSYNSYNSYNSYSQKRNDFIEATINLGKKDNINPTVLIRLLKDEYQIYGKN
IGNIKHLTHETIFEIPSRFWNQMKNKSDIRFQNKILVINKKE
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaaaacattttatatttttacttgtataattcaaaaaaagaaagaaatgaggaa
attatgaatattttattcgaacaattacctattttagaacaaactaaaaaagctttgcaa
gagcttaactttatcgaagcaacacccattcaagctttagtgatcccagaaattatccaa
ggacacgatgtaattggacaagcgcaaacaggaacaggaaaaacttttgcctttggaatc
cctattattgaaaaaattgattataaattatctaaaactcaaagtttaattttatgcccc
actagagaattaactttgcaagtttatgaagagttgaaaaaattactacgttattacccg
caaattagaattgcagttgtttttggtggtgaatcctacactaaacaatttagagcttta
gaaagtaaaccacatttaattattgcaactccaggaagagtgattgaccacatagaaaga
ggcaaaattgatttatcagcgttaaaaattttaactttagatgaagccgatgaaatgtta
aaaatgggatttcaagaagctttagaaactatattaaaacaaatcccagaagaaagacaa
actgttttattttctgccactcttcctccttccatcaaacaaattgcaagcaaataccaa
aaaaacactaaaattttacaagttcctgttaaaaaacttgccgttaacgcaattgaacaa
tattattttttagtcaaagaatttgataaaaacaagttattagttcgtttattagactta
aaaagagattattcaaccattctatttgccaacaccaaaaaagacgtggatgaaattgct
tcttttttacaagacaaagggtttttagctgatgctgttcacggagacttaaaacaaaat
caaagacaatatgtcatgaataatttccgcaaaggaaaaataaaaatcttaatcgcaacc
gatgtggctgcaagagggattgatatttctgatatcaaaatggtagttaactatgattta
cctcacgaagatgaagtttatgtccacagaatcggaagaactggacgcgcaggcaaaaaa
ggtttggcttatagttttatcagtccaagaaaattcagtcaactcaaaaaattagaatat
tatttaaaagaaaaagtaaaattcttagaaattccttcagttgaagaaatcaaaaaacaa
attttggaaaactttgaacaaaaagtaatagatattattgaaaaaaatagccaagaaaac
gctaataatccaatgattgaaaaattattacaaaaattttcttctgaacaaatcattcaa
ggtttattaacaaacatccaaccaaaagcaaaaaattatacagatattatacctccaaga
atgacatttactccaagagaaacatttaataacaattcttttggtaatagaagatttgga
gaaaaacgtttccagaatccaaaatttagctcctataattcctataattcttataattcc
tatagtcaaaaaagaaatgacttcattgaagcaacaattaaccttggtaaaaaagataat
attaacccaactgttttgattcgattattaaaagatgagtaccaaatttatggtaaaaac
attggcaatatcaaacatttaacccatgaaactatttttgaaattccgagtcgtttttgg
aatcaaatgaaaaataaatcagacattcgcttccaaaacaaaattttagttatcaataaa
aaagaataa
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