Strawberry lethal yellows phytoplasma (CPA): SLY_0917
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Entry
SLY_0917 CDS
T02674
Symbol
holB
Name
(GenBank) DNA polymerase III delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Pathway
nzs03030
DNA replication
nzs03430
Mismatch repair
nzs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLY_0917 (holB)
03430 Mismatch repair
SLY_0917 (holB)
03440 Homologous recombination
SLY_0917 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nzs03032
]
SLY_0917 (holB)
03400 DNA repair and recombination proteins [BR:
nzs03400
]
SLY_0917 (holB)
Enzymes [BR:
nzs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SLY_0917 (holB)
DNA replication proteins [BR:
nzs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SLY_0917 (holB)
DNA repair and recombination proteins [BR:
nzs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SLY_0917 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
AGL90832
UniProt:
R4RY35
LinkDB
All DBs
Position
complement(792130..793077)
Genome browser
AA seq
315 aa
AA seq
DB search
MPNQPFLKPFLKIIQNKKLAHLYLITGLDLPQRKKFVLELSYQILKSQENTQNHSFLKQT
LTEGTYPNFYYLKKDNHLFKKEQILQLKDFFSQSSLFGEQRIYVIEEMEKTTLPAANSLL
HFLENTPNNIIGFLLTDNLHQVLTTIVSRCQVINIDVFKQQLLTPAIEERKLSQEIDVMN
CALIPLINISSDENTAYYLEFKKYFLFFLEQFPKDGSCATYDFATVLINSFAVFLSDLVS
VLLRWFLDLFYQKKQLPIYFENQAHHQKEFQNLTLQRITNILEILQKYHQEKINLVNPQN
LFFALILELEQQKYF
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaccaaccatttttaaaaccattcttaaaaataattcaaaacaaaaaattagct
cacctttatttaataaccgggcttgatctccctcaaagaaaaaaatttgttttggaatta
tcttatcaaattttgaaatcccaagaaaatactcaaaaccattcttttttaaaacaaact
ttaactgaaggcacatatcctaacttttattatttaaaaaaagataaccatctttttaaa
aaagagcaaatattgcaattaaaagatttttttagtcaaagttctttgtttggagaacaa
agaatttatgtgattgaagaaatggaaaaaacaactttgccagcagccaacagtttgctt
cattttttagaaaatactcccaataatataattggttttttgttgacagacaatttacat
caagttttgacaacaatcgtttcacgttgtcaagttatcaatattgatgttttcaaacaa
cagttattaactcctgcaatcgaagaacgaaaattatcgcaagaaatagatgttatgaat
tgtgctttaattcctttgataaatatttcttctgacgaaaatacagcttattatctagaa
tttaaaaaatattttttgttttttttggaacaatttcctaaagatggttcttgtgcaact
tatgactttgctactgttcttataaattcttttgctgtttttttaagcgatttggtatca
gttttgttaaggtggtttttagatttgttttatcaaaaaaaacaattgcctatttatttt
gaaaatcaagcacaccatcaaaaggaatttcaaaatttaactttacagcgaatcacaaat
attttagagattctgcaaaaatatcatcaagaaaaaattaatttggtgaatccccaaaac
ctcttttttgctttaattttggaattagaacaacaaaaatatttttaa
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