Nitrosopumilus zosterae: NZOSNM25_000329
Help
Entry
NZOSNM25_000329 CDS
T08647
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nzt
Nitrosopumilus zosterae
Brite
KEGG Orthology (KO) [BR:
nzt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nzt03016
]
NZOSNM25_000329
Enzymes [BR:
nzt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NZOSNM25_000329
Transfer RNA biogenesis [BR:
nzt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NZOSNM25_000329
Prokaryotic type
tRNA splicing ligases
NZOSNM25_000329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDQ30229
LinkDB
All DBs
Position
280860..282308
Genome browser
AA seq
482 aa
AA seq
DB search
MSSTTPRKIGENQYQIDVDSNFGMKVPVRIYADEPLLQKMLSDRTIMQARNVASIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLDEQTVRSKLKE
LVNDLFSSIPSGVGSKGAVKLTHSELDEVLVKGVNWAIDHGYGSSNDSDVCEENGQIQNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAANRMGIKEGTITVLIHCGSR
GFGHQVCSDYLRVSEQAMQKYDIDLPDRELACVPNNSEEGESYRKAMFAALNFAWSNRQM
LTHWTRNSFERVFHQTESDLDMKLVYDVAHNIAKVEKHNVDGKERKLVIHRKGATRAFPA
NRQEIPSKYRDLGQPVLVPGSMGTSSWILLGQPNSMNLSFGSTAHGAGRTMSRSKARRNY
TENDVKKSLNDQGIFIKALTRDGVVEETPQAYKDVDAVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctactacaccaagaaaaattggagaaaaccaatatcaaattgatgtcgattca
aattttggaatgaaagttcctgttaggatttacgctgatgaaccattattacaaaaaatg
ttatctgatagaactattatgcaggcacgaaatgtagcctcaattcctggaattgtggga
catagtgttgttttgcctgatggacatgagggttatggttttccagtaggtggtgtagcc
gcaatggatgctgaagagggaatgattagccctggtggtgtaggatatgatatcaattgt
ggagttaggttacttcgttcaaatttagatgaacaaacagttcgttctaaactaaaagaa
cttgtaaatgatcttttcagctctattccttcaggagtgggttctaaaggtgctgtaaaa
cttactcattcagaacttgatgaggttttggttaaaggtgtgaattgggcaattgatcat
ggttatggctcatcaaatgattcagatgtttgtgaagaaaatgggcaaattcaaaatgct
gatccaaacaaagtttctgataaagcaaggaaaagaggtgctcctcaacttggtagcttg
ggttctggaaatcattttcttgaggtgcaaaaggtttcagaaatacatgatgaagaagct
gcaaacagaatgggaattaaagaaggaacaataaccgttttaattcattgtggttctaga
ggttttggtcatcaagtttgtagtgattatcttagagtttcagaacaagccatgcaaaaa
tatgatattgatttgcctgatagagaacttgcatgtgttccaaacaactctgaagaaggt
gaatcctatagaaaagcaatgtttgcagcactaaattttgcatggagtaatagacaaatg
ctcactcactggactaggaattcttttgaacgtgtatttcaccaaacagaatctgatctt
gatatgaagttagtttatgatgttgcccataatattgcaaaagtggaaaaacacaatgtt
gatggaaaggaaagaaaacttgttatacatagaaaaggtgcaactagagcatttcctgca
aaccgtcaagagattccttccaaatatcgtgatttaggccagcctgttttagttcctggc
tctatgggaacttcaagctggattttacttggtcaaccaaattctatgaatttgagtttt
ggctctactgctcatggtgctggtaggacaatgtctagatctaaagccagacggaactat
actgaaaatgatgttaaaaagtctcttaatgaccagggaatatttatcaaagcattaaca
cgagatggggttgtggaagaaactcctcaagcatacaaagatgttgatgcagtagttaac
gtatcccataatttaggaatagccacaaaagtagcaaaattagtgcctattggtgtgatt
aaaggttga
DBGET
integrated database retrieval system
