Nitrosopumilus zosterae: NZOSNM25_001371
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Entry
NZOSNM25_001371 CDS
T08647
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nzt
Nitrosopumilus zosterae
Pathway
nzt03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nzt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NZOSNM25_001371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nzt03021
]
NZOSNM25_001371
Transcription machinery [BR:
nzt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NZOSNM25_001371
Prokaryotic type
Archaeal type
TFB
NZOSNM25_001371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Ribosomal_S27
HTH_AsnC-type
Cyclin_N
Lar_restr_allev
RPW8
zf-CCHC_5
Zn_ribbon_3
HTH_3
HEF_HK
RB_B
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
BDQ31259
LinkDB
All DBs
Position
1141847..1142755
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AA seq
302 aa
AA seq
DB search
MVKKLNPKDRCPRCGQGTVVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKSR
AGVPTSLAMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQ
AFSELDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRT
LKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRKATKIL
QTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKIAL
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaaaattaaatccaaaggacagatgtccaagatgtggacagggtacagtagtc
acagacgctaatacaggagaaaatttttgtggaaaatgtggatttgtaattacagataaa
gttgaagagtctggaccagaatggagatcattttcaaatgaaggtgaaaacaaaagcagg
gcaggagttccaacatcacttgcaatgcatgatatgggattagcgacagtaatcaaccca
cagaatagagatgcaacaggaaagccactcacagcgtcaatgaaaagtacaatcgagaga
ctaagaacctgggatagtagaagtcaagttcatgaaccagtagatagaaatttcagacag
gcatttagtgaattagacagattaaaagacaaacttgcagtaggagacgcagttattgaa
aaagcagcttatatctatagaaaagcattagaaaaaggactagtacgtggacgttccatt
tcagctttaattgcatcagcactatatgcagcatgtagagacacagaaactcctagaacg
ttaaaagacataggacaggcaagcaacatcaagcgaaaagacattgcaagatgctatcgt
cttttgctaagagaattaaatctgaaaatgccggtagtggatcctgtaaaatgcatttca
agaattgcaagtaaagcaggattatcagaaaaaacaaaaagaaaagcgacaaaaatttta
cagactgcagaagaaaataaaatttcggcaggtaaagatccgatggggttggcagctgct
gcactttatgtcgcatgtgtcacaaatggagaaaacaagactcaacgagatgttgcagaa
gctgcaggtgtaacagaagtcacaattagaaatagatacaaaggattgaaaatagcgtta
aatctctag
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