Nitrosopumilus zosterae: NZOSNM25_001589
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Entry
NZOSNM25_001589 CDS
T08647
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
nzt
Nitrosopumilus zosterae
Pathway
nzt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nzt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NZOSNM25_001589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nzt03019
]
NZOSNM25_001589
Messenger RNA biogenesis [BR:
nzt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NZOSNM25_001589
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NZOSNM25_001589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BDQ31469
LinkDB
All DBs
Position
complement(1316542..1317276)
Genome browser
AA seq
244 aa
AA seq
DB search
MGGRDATMVLLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPR
DVHPKHMSNTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPR
TAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEED
QAGQADMPIGYMPNLEKITLLQLDGVLTPEEYKKCVQVGVEGCKLVYDLQKKALQDKYFG
NGAG
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgggcggacgagacgcaacaatggtcctattggacgagaatggtattagatgtgatggc
cgtaaagtagacgaaccaagacgaataatgattaaagctggcggactcaaaaacgcagat
ggttcagcatacattgaatttggcgataacaaaatcttagttggtgtttttggtccgaga
gacgttcatccaaaacacatgtcaaacactgatacaggaattttacgagttaggtatcat
atggagccattctcagttggagaaagaaaaaatcccgctccctcaagaagagagattgaa
atttccaaagtaatcaaagaagctttagagcctgcagtgatgttggataaatttccaaga
actgcagttgatgtattcattgaagtattgcaagccgatggtggaaccagatgtgctgca
cttacagcagcttctgtcgcattagcagatgcaggtattcctatgagagatatggttgca
gcaattgcagcaggtaaagttgcagatactgtaatccttgatgtaaacaatgaagaagac
caagcaggtcaggcagatatgccaattggctatatgccaaatctagaaaaaatcacacta
ttgcaattagatggagttcttacacccgaagaatacaagaaatgtgttcaagttggtgtt
gaaggttgtaaattagtttatgatcttcaaaagaaagcattacaagacaaatactttgga
aacggagcaggttaa
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