Nitrosopumilus zosterae: NZOSNM25_001590
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Entry
NZOSNM25_001590 CDS
T08647
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
nzt
Nitrosopumilus zosterae
Pathway
nzt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nzt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NZOSNM25_001590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nzt03019
]
NZOSNM25_001590
Messenger RNA biogenesis [BR:
nzt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NZOSNM25_001590
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NZOSNM25_001590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_1
KH_6
RRP4_S1
RRP40_S1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
BDQ31470
LinkDB
All DBs
Position
complement(1317276..1317956)
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AA seq
226 aa
AA seq
DB search
MDNKRKYVIPGDVVTTGPFRPEQNVELQGNKIISTTIGISEIYDDSVKVIPLTGKYIPKI
NDLVIGKVISHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELASKLKSGDLVAARIA
NFDRTRDPLVTISDRDLGKIDTGILLQISPSKVPRLIGKRGTMIQMIEMATDAAITIGQN
GWVVVSCESPEGLLKAKKAIEMVNEKAHVANLTDQVKEMLDSKGES
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggataataaaagaaaatacgttattccaggtgatgtagtgaccacagggcctttcaga
cctgaacaaaatgtagaacttcaaggaaataagataatttcaactactattggaatttct
gaaatttatgacgactccgttaaggtaattccgcttactggaaaatacattccaaaaatc
aatgatctcgttattggtaaagtgatatctcatacatcactgtcgtgggaattggacatt
aattcgtgctatgttggatttttaccagcacaagatgtcttcggacgagacttttctgca
catgcagatgaacttgcatcaaagctaaagtcaggtgatctggttgctgcacgaattgcc
aattttgatagaacacgtgatccactagttacaatttctgatagggatttaggcaaaatt
gacaccggaatactactacaaatatcaccaagtaaagtcccacgcctaattggaaagaga
ggtactatgatccaaatgatagagatggcaactgatgctgcaattactattggtcaaaac
ggctgggtagtagtttcatgcgagtcgcccgagggattattaaaggctaaaaaggcaatc
gaaatggttaatgaaaaagcacacgttgctaatttgactgatcaagtgaaagaaatgtta
gactcaaaaggtgaatcataa
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