KEGG   Nitrosopumilus zosterae: NZOSNM25_002090
Entry
NZOSNM25_002090   CDS       T08647                                 
Name
(GenBank) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
nzt  Nitrosopumilus zosterae
Pathway
nzt03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nzt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NZOSNM25_002090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nzt03021]
    NZOSNM25_002090
Transcription machinery [BR:nzt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     NZOSNM25_002090
 Prokaryotic type
  Archaeal type
    TFB
     NZOSNM25_002090
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Zn_Ribbon_1 Trm112p Sigma70_r4 HTH_11 Baculo_ME53 Cyclin_N RPA_interact_C HTH_AsnC-type Sigma70_r4_2 Auto_anti-p27 Zn_ribbon_tTFIIB HEF_HK Ribosomal_S27 Zn_ribbon_RRN7
Other DBs
NCBI-ProteinID: BDQ31948
LinkDB
Position
complement(1759708..1760613)
AA seq 301 aa
MVSKGKDLCPRCAQGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNKARA
GAPTSLTMHDMGLATIINPINKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQA
FSELNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTETPRNL
KDVEQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRYATKVLK
MAQDNEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYKGLKESLD
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atggtaagtaaaggcaaggatctatgtccacgatgtgcacaaggaaaactagttactgat
aatgaatcgggagaaatgttttgctcaaagtgcggatttgtaattactgaaaaactgcaa
gaagcaggacctgaatggagatcctttacccaagatgaaggaggaaacaaggcaagagcc
ggtgctccaacatcactaacaatgcatgacatgggtcttgcaacaataattaatcctata
aacaaagatgcatcaggtagacctctaacagcatcaatgaaaagtactattgaaagactc
agaacttgggatagtagaagtcaagttcatgaaccagttgacagaaatttccgacaggca
tttagcgaattaaacagactaaaagacaaactagcaatatctgatgcagttattgaaaaa
gcagcctacatttatagaaaagcactcgagaaaggtctagttcgaggtcgctcgatttca
gctttgatggcatctgctctttatgctgcatgcagagatactgaaactccaagaaatctc
aaagatgtagagcaagcagcaaacatcaaaagaaaagatattgcaagatgttacagattg
ctagtcaaagagcttgacttgaagatgccagtaactgattcaattcaatgtgttgcaaga
attgcaagcagaattggaattgcagagaaaacaaaaagatatgcgacaaaggtgctaaaa
atggctcaagacaatgaagtatcagctggaaaagatcctatggggttggcagctgctgca
ttgtatctatcttgtgtaaaaaatggtgaggacaagactcagcgtgatattgcggaagct
gcaaatgtaactgaagtaactattagaaatagatacaaaggcctcaaagaatcattagat
ctgtga

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