Ornithorhynchus anatinus (platypus): 100083276
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Entry
100083276 CDS
T01045
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100083276 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oaa03019
]
100083276 (MTREX)
03041 Spliceosome [BR:
oaa03041
]
100083276 (MTREX)
03009 Ribosome biogenesis [BR:
oaa03009
]
100083276 (MTREX)
03016 Transfer RNA biogenesis [BR:
oaa03016
]
100083276 (MTREX)
Enzymes [BR:
oaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100083276 (MTREX)
Messenger RNA biogenesis [BR:
oaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100083276 (MTREX)
Spliceosome [BR:
oaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100083276 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
100083276 (MTREX)
Ribosome biogenesis [BR:
oaa03009
]
Eukaryotic type
Pre-60S particles
Helicases
100083276 (MTREX)
Transfer RNA biogenesis [BR:
oaa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100083276 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
DUF2486
Motif
Other DBs
NCBI-GeneID:
100083276
NCBI-ProteinID:
XP_028922216
Ensembl:
ENSOANG00000004885
UniProt:
A0A6I8NTX7
LinkDB
All DBs
Position
1:7371358..7468344
Genome browser
AA seq
1030 aa
AA seq
DB search
MADAFGDDLFSVFEDDAAKKGKGPAEAPAKAGKRAESNSQAGPANNAGKNKRETELDSTD
DAILVKKPKIGDGLSEDLSLTDLMPRVKVQAVETVEGCTHEVALPADEDYVALKPRVGKA
AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPS
NVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTAEEKKMVEEVFNNAIDCLS
DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP
ARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTVGKQLL
KGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNLEHQY
HKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKSEGDDFGWG
VVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQVVPVL
VHLLSSISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKK
VIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKGAKRELKKARTVLQMDELK
CRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCF
VFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNSFKPNLMDVVYT
WANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgacctcttcagcgtcttcgaggacgacgccgccaagaaa
gggaaaggccccgcagaagcccccgccaaagccggtaaacgggcagagagcaactcacaa
gcaggaccggccaacaatgcagggaaaaacaagagggaaacggaactcgacagtacggat
gacgccattcttgtaaagaaacccaagatcggagatggattatcggaagacctgagtttg
acagacttgatgcctcgagtcaaggttcaagcagttgaaaccgttgaaggctgtacacat
gaggttgcccttcctgccgatgaagattatgtagccctgaagccaagggttggaaaagct
gcaaaggaatatccattcatccttgatgctttccagagagaagccattcagtgtgtagat
aacaatcagtccgttttagtgtctgcacatacatcagccgggaaaaccgtgtgtgccgag
tatgccattgccttggctctgagagaaaaacagcgggtgatattcaccagtccaattaaa
gccctgagtaaccagaaatatcgggagatgtatgaagaatttcaagacgtgggcttaatg
acgggtgacgtcactatcaatcctacggcttcgtgtcttgttatgactacagagatattg
agaagcatgttgtaccgaggttccgaggttatgagagaagttgcttgggttatatttgat
gaaatccattacatgagagactcagaacgtggtgtagtgtgggaagaaacgattattttg
ctgcccgacaacgtccactacgtgtttctctccgctaccatccctaacgcgcggcagttt
gccgaatggatctgtcaccttcataaacagccttgccatgtgatttacacagattaccgg
cccactcctctgcagcattacatcttcccggcaggaggcgatgggctccatcttgtggtc
gatgaaaacggtgatttccgagaggataattttaatactgcaatgcaagtacttagagat
gcaggcgatttggccaaaggagaccaaaaaggtcggaagggaggaacaaaaggaccgtca
aatgttttcaagattgtgaagatgatcatggaaaggaatttccaacctgtaattattttc
agtttcagtaagaaagactgtgaggcatatgcacttcagatgaccaaactagacttcaac
acagccgaagaaaagaagatggtggaggaagtatttaataatgcaattgactgcttatcc
gatgaagataagaagcttcctcaggttgagcatgtgcttccccttttgaagagaggaatt
ggtatccaccacggtggtctgctccccattttaaaagaaacaattgagattctcttttct
gaaggtttgataaaggctttatttgcaacggaaacctttgctatgggaattaacatgccg
gcaaggacggtgttgtttaccagcgcccgcaaatttgatgggaaagattttcgatggatt
tcttcaggcgaatacattcagatgtccggtcgggccggaaggcggggtatggatgataga
ggaatcgtcattctaatggtggatgagaagatgagcccaactgttggaaaacagcttctt
aagggctcagcagatcctctgaacagcgctttccatttgacctacaacatggtcttgaac
ttgcttcgggtagaagaaattaatccggagtacatgttagaaaagtccttctaccagttt
caacactatagagctattccgggagtagtagagaaggtaaagaatttagaacaccagtat
cacaaaatcgtcattcccaacgaagaaagtgtggtgatctactataagatccgacagcaa
ctcgccaaactggggaaagagattgaagaatatattcacaaacccaagtactgtttgccg
tttttgcagccgggcaggctggtaaaggtgaagagtgaaggggatgactttggatgggga
gtagtggtcaatttctccaaaaagtctaacgttaagcctaattctggtgagctggatcct
ctgtatgtggttgaagtccttctacactgcagtaaggagagtttgaaaaattccgctacc
gaggcggcgaaacccgcaaagcccgatgagaagggagaaatgcaggttgttcctgttttg
gtacatcttctgtcttccatcagcagtgttagactttacatcccgaaagacctgcgccca
gtggacaacagacaaagtgtgttaaagtcaatacaggaagtacagaagcggtttcccgac
ggagtcccgttattagatcccattgatgatatgggcatcaaagatcagggactgaaaaaa
gtcatccaaaaaattgaggcttttgagcatcgtatgtattctcacccgctccacaacgac
tccaacttggaaacggtctacaagctgtgcgaaaggaaagcccagattgcggtggatatt
aaaggtgcgaagcgagagctgaagaaagcgagaacggtcttacaaatggatgagctcaaa
tgtcgcaaacgggttctgcggcggttgggctttgccacatcttcggatgtcatagagatg
aaggggagagtggcttgtgagatcagcagcgccgatgagctgctcctgaccgaaatgatg
tttaatggacttttcaatgacctctcggccgaacaagcgacggcattactgagctgtttt
gtgttccaagaaaattccagtgaaatgcccaaattgacagaacagttagcagggccactt
cgtcaaatgcaggaatgcgctaaaagaattgccaaagtttcggccgaagctaaattagaa
atcgatgaggagacttatctgaattccttcaagcccaatttaatggatgtcgtgtacacg
tgggctaatggagcaacatttgctcacatttgcaaaatgacggatgtcttcgaagggagt
ataattcgctgcatgaggcgcctggaagaattgctgcgtcagatgtgtcaagcggcaaag
gccattgggaacaccgaactggaaaataaatttgcagaaggaatcaccaaaatcaagaga
gatatcgtgttcgccgcaagtctgtatctctga
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