Ornithorhynchus anatinus (platypus): 100083291
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Entry
100083291 CDS
T01045
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100083291 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oaa03032
]
100083291 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
oaa03400
]
100083291 (TOPBP1)
DNA replication proteins [BR:
oaa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
100083291 (TOPBP1)
DNA repair and recombination proteins [BR:
oaa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
100083291 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
100083291
NCBI-ProteinID:
XP_028926708
Ensembl:
ENSOANG00000006784
LinkDB
All DBs
Position
8:38459639..38502253
Genome browser
AA seq
1517 aa
AA seq
DB search
MSSSDREPFFVKFIKSQDNREFFFTALESIKEFQSEEYLQTITEEEALKIKENDRSLYIC
DPFGGDVFEHLKKLGCRIVGPQVVLFCMQHQRCVPRADYPVFNMIMADVTISCTSLDKET
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPIMRPSWIKTLWEKSQ
ENRMIRCTDVDLEEFRCPLFLGCTICVTGLSSLDRKEVQRLTVEHGGQYMGQLKMNETTH
LVVQEPKGQKYECAKRWNVHCVTIQWFFDSIERGFCQDEVMYKTEPRPETKNLPDTSTPT
GQTSKADSRTLSDVSHISNINSSCVNESAFTSALNSKLDSLLEDLENLDVSTLQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINCGGGVRFNQLNEDVTHVIIGDFDDELKHFWNKSTHRP
YVVGAKWLLECFSKGYLLSEEPYVHVNYRAVEISVSEQPGIKPALSKRNSNLPKKDSVAS
EVQQQADEDLLSQYEKNDSTLGVAEKSEAGKFNDSTHILWKEEDQSSSHNHLPEASTIIE
SGLFSKKRFLVVGFSEDDEPCISDAIRENAGKVVSLQKRIIADYAVVPLLGCKVESTVGE
VVTNTWLGMCIEHQVLFDPESNPLFTPLPVMEGKTPLEDCVLSFSQFTGAERDSLIYLAS
LLGARVQEFFVRKANTKKGMFASTHLVLKEPDGSKYEAAKKWNLPAITVSWLLQSARLGK
KAEESKFLVENASAKAEESSQSQKPTDQTQVSGSDTPEKSSTLLESKRNSAVTPLDMNRF
QSKAFHTVLSQQARKTSVSGEGKPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAVLE
TPRGCSQRHRKLSTPLSEVIGRNLKLAVANSTRHVAVLSASPRLEDAQLEKSIQKEEFKP
LTDVVICVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRQNDSNREYRSVKER
GIHIVSEHWLLQSAQEYRRLPESLYPHTYNPKMSLDISATQDERLYTGQLSSSDKIPKDN
EPESLSMEVKNVEDGPSDPMEMETANDNHPNPKGVLTQTLEMRENFQKQLQEIMSATSIA
KPQGQRGSLSRNGCDSTPSTPDSARSARSSRTRALEVLRQPHRTLTDLNTEPSQSEQIIW
DDPTAREERARLASNLQWPTSPTRLSELPADVTDLDDSPFTDSLHDSETSELAAADPEKA
WDTEDPKNQISEEAETTMKDDHLIPTPQAPSIAFPLANPPVAPQPKEKTVREKETREELT
KQYIFQLSSLNPQERIDYCHLIEELGGSVLEKQCFDASCTHIVVGHPLRNEKYLASMAAG
KWVLHRSYLEACRTAGCFVQEEDYEWGSSSILDVLTGINLQQKKLALAAMRWRKKIQRRQ
EEAGVVEGAFSGWRVVLNVDQSREAGFKRLLQSGGAKVLPGHSPSLFKEATHLFADFSKL
KPDDTRVNVMEAAAQNVNCLKPEYIADYLMQELPPPMENYCLPGAAVPQNRKELDAGLSQ
KRKAPAEKNKVKRLRLH
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcagtgacagggagccgttttttgtgaaatttataaagtctcaggacaacaga
gaatttttttttacagctcttgagtctataaaagaattccagtcagaagagtatctccag
actattacagaagaggaggccctcaaaataaaagaaaatgacagatccctttatatctgt
gacccatttggtggcgacgtcttcgaacacctcaaaaagcttggttgtagaattgtggga
cctcaagtagtcctattttgtatgcagcaccagcgatgtgtaccaagagcagactatccg
gtttttaatatgattatggcagatgtaactatatcctgtaccagtcttgacaaagaaaca
agggaagaagttcataaatatgttcagatgatgggtggacgagtgtacagagatcttaat
gtatcagtaactcatcttattgctggagaagtaggcagcaaaaaatacttagtagctgct
agtttaaagaaacctatcatgcgcccttcttggataaaaacgctatgggagaagtcacaa
gaaaacagaatgatcagatgtacagatgtagacctagaagagtttcggtgccctctattt
cttggctgcacaatttgtgtgactggattaagtagtctggacaggaaggaggttcagcga
ctaacggtagaacacggcggccaatacatgggacaattaaagatgaatgaaaccactcac
cttgtcgtgcaagaaccaaaagggcagaaatatgaatgtgccaagagatggaatgtacat
tgtgtgaccatccagtggtttttcgacagtattgagagaggtttttgtcaagacgaagtt
atgtataagacagagcccagaccagaaacaaagaacctgccagatacttcaactcctact
ggtcagaccagcaaagccgatagtcgtaccctttcagacgtcagccatatttctaatatc
aattcaagttgcgtaaatgagtctgcgtttacctctgctctaaacagcaaattggattct
ctcctggaggatttagaaaatctggatgtcagcactttacaagcaccagaagatttacta
gacggttgtcgaatatatctctgtggatttagtggccgaaaattagataagctgagaagg
cttattaattgtggtggtggagttcgttttaatcagctcaacgaagatgtcactcatgtc
attataggagactttgatgatgaattgaagcacttttggaataagtcaacacacaggcca
tatgtagtaggagcaaaatggctgctggagtgctttagtaagggctatctgctttctgag
gagccatatgttcacgtgaactaccgagcagtggaaatttccgtttcagagcaacctgga
atcaaacctgccctttcaaaaagaaatagcaatttgcctaagaaagattccgtggcctct
gaggtgcagcagcaagcggatgaggacctactctctcagtatgagaaaaatgactcgaca
ttaggggtggctgagaaatctgaagctgggaaatttaatgattctactcatatcctttgg
aaagaggaggatcaatcttccagtcacaatcaccttcctgaggcttctacgattattgaa
agcggattgttcagcaagaaaaggttcctcgttgtgggtttttctgaagatgatgagcct
tgtatttcagatgctataagagaaaatgctgggaaagttgtatccctccaaaaaagaatc
attgctgactatgctgtggttcctttactggggtgtaaagtggagtcaactgtaggagaa
gtggttacaaacacatggctgggtatgtgcattgagcatcaggtcctgtttgacccagag
tcaaatcctcttttcacaccactacctgtaatggaagggaaaacccctttagaagactgc
gttctttcattcagccaatttactggggcagagagagactccttgatatacttagcaagt
ttgcttggagcgagagttcaagagttcttcgtacgcaaagctaataccaaaaaaggcatg
tttgccagtacccacctggtgctgaaagaacctgatggttccaaatatgaagcggcaaaa
aagtggaatttacctgcaatcactgtgtcttggctcttacaatctgcgaggctgggaaag
aaagctgaagaaagcaagtttctggtcgagaacgcatctgccaaagcagaagaaagttct
caaagtcagaaaccaacagatcagactcaagtatctggttcagacacaccagaaaagtct
agcacactcttggagagcaaaaggaactcagccgtgacacctttggatatgaacaggttt
cagagtaaagcttttcatacggtactctcacagcaagccaggaaaacctcagtttccgga
gaaggaaaaccacttcagaaggaaccgtcgctacacctagacacaccatcgaaatttctg
tccaaagacaagctcttcaagccttcatttgatgtgaaggatgccttggcagttttggaa
actccaagagggtgtagccagagacacaggaagttgagcacccccctctcagaagtcatt
ggcaggaacctgaaactggccgtagcaaatagcactcgtcacgtagcggttctttccgca
agtcctcggctggaggatgcccagctggaaaagtccatacagaaagaagaattcaaacca
ttaactgatgtagtgatatgcgtcagtaagaaactcagtaagaagcagagcgagctgaac
ggtattgcagcatctctaggagcagattacaggtggagcttcgatgaaacggtgacacat
ttcatctaccaggggcgacagaacgacagtaatcgagaatatagatctgttaaagaaaga
ggaatacatattgtttctgaacactggcttttacaaagtgcccaagaatacagacgcctt
cccgaatctctttacccacacacctacaatcccaaaatgagcctggatataagtgcgaca
caagatgagaggctctataccggtcagctttcatcatctgataaaataccaaaggataat
gagcctgagtctctatctatggaggtgaagaatgtagaagacggaccctctgatccgatg
gagatggagaccgcaaatgacaatcacccaaatcccaaaggagtgctaacacagaccctg
gaaatgagggaaaacttccagaagcagctgcaagaaatcatgtctgcgacatcaatagcg
aaaccccaagggcagaggggctccctctccagaaatgggtgtgacagcactccttcaact
ccagacagcgcgcgttctgctcgaagtagtcgcacccgagccttggaagtgctaagacag
cctcatcggaccctaaccgatctcaacaccgagccctcccagagcgaacagatcatttgg
gacgatcctacggcacgagaggaaagagcgaggctggccagcaacctgcagtggcccacc
agtcccacgcgactctccgagctcccagccgacgtgacagacttggatgactccccgttt
acggactccttacatgactctgaaacttccgagctagctgctgctgatcccgaaaaagca
tgggacactgaggacccgaagaaccagatctcggaagaagcagaaaccacaatgaaagat
gaccacctgatccctacaccacaagcccccagcatcgctttccccctagccaacccgccc
gtggctccacaacccaaagagaagacggtacgggaaaaggagactcgtgaagagctgaca
aaacaatacatattccagctctcctctctcaatcctcaagaacgaatcgactactgtcat
ttgatcgaggaactaggtggatcggtgcttgaaaagcagtgctttgacgcgagctgcacg
cacatcgttgtgggtcatcctctccgaaatgagaagtatttggcttccatggcagctggc
aagtgggtccttcatcgctcctacctcgaggcctgtaggaccgccgggtgctttgtgcag
gaggaagattatgaatggggaagcagttccatactcgatgtgctgactggaatcaacctg
cagcagaaaaaattagccctggcagcaatgagatggcggaagaaaatccagagaagacaa
gaagaagcaggcgttgttgagggggcatttagtggctggagggtagttttaaatgttgac
cagtccagagaagcaggattcaagcgtcttcttcagtcaggaggggcaaaggtgctgccg
gggcactctccatctctctttaaagaagccacacacctcttcgcggacttcagtaaacta
aaaccagacgataccagagttaatgtgatggaagctgctgcccaaaatgtgaactgcttg
aaaccagaatacattgcagattatcttatgcaggagttgcctcccccgatggagaattac
tgccttcctggagcagctgttcctcagaacagaaaggaactcgatgcaggtctatcccag
aagagaaaagcgcccgctgaaaaaaataaagtcaagcgcctccggctacactga
DBGET
integrated database retrieval system
