Ornithorhynchus anatinus (platypus): 100083332
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Entry
100083332 CDS
T01045
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100083332 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oaa03021
]
100083332 (PCF11)
03019 Messenger RNA biogenesis [BR:
oaa03019
]
100083332 (PCF11)
Transcription machinery [BR:
oaa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100083332 (PCF11)
Messenger RNA biogenesis [BR:
oaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100083332 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
100083332
NCBI-ProteinID:
XP_028903734
Ensembl:
ENSOANG00000006552
LinkDB
All DBs
Position
20:complement(28705471..28729170)
Genome browser
AA seq
1656 aa
AA seq
DB search
MAEAAEAARDDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAP
STEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIF
PLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLSKSPDEPPTPSPKVSSPGIS
TPPIVPDIQKNLAKEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGTSA
MGPVPAPSKIHVPPAAHGAGKSSQQVSVPPEKKHPSPPSQLQDVKLTNRDPRLNRMSQHS
SHAKDPSHRKEFPANAVNQSESKVGKAVPTEKQNSTKPEKMKSSEKIPKKEADQFDAKSK
SPSPLKNKGSHAKEVKNQEPDGLRASEISKRDPRLKKHLQDKPDGKDDEPKEKRKSIEKK
DKEEHAKSSEHRPAGGRSKVINGVVQKQEASPEEADKAAAKAGRSSARKRSRSRSPKSRS
PITHSPKRRERRSPKRRQRSLSPTSTPKPGKPRPSSAKQAHAEEFGQAAREERNQNKRSG
KQEARDPRRVKKSQEERPQDAASQHSSKSGSEPKENVENWPGSKSAKRWKSGWEENKNLP
QGEDHQGLSKSPHLRHRESWAGAKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLK
KANERLTSGEISQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEENQGGLKKKPLLSDAE
LTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEQAKSKHSSRGGSGQF
DRKEPFSERSRRHSPIPGSRAFGENLSPLESRRRHEEQVSVKGAREEQRSPFNDRFALKR
PRYEDSEKAFAESPASRFAGLDTNQRLTALAEDRPLFDGPSRQPVTRGEGPTKILFEGPN
KLNSRLEGPPTPGSLRFEGPSGQLGAGGPMRFEGPQGQLGGHLRFEGPQGQGGAPLRFEG
PLGQGGGGGGLRFEGPVGQSVGGLRFEGPRGQLVGGLRFEGPHGQPVGLRFEGARGQPVG
GLRFEGPHGQPVGGLRFEGPHGQPGGGIRFEGPLLQQGGGLRFEGPHGQSGAGMRFDGPH
GQLGGGLRLEGPIGQPAGGMRFEGPLVQQGGGIRFEGPSVQGGGLRFEGPLGQSGPRFDG
CHTARFDGQPGQPSLLPRLDGMHGQPGPRFERAPGQQALQRLDGQPVQPRFDPQVPQRFE
GPRQPASRFDLALGLQGGRFDGHHPGQRLEAAAFGQAGPFGEPPGGAFSPAQGLPFQRHE
QMFDGPRGPSFNGPPGPGVQNFPLNRASGHFFEEKNLQGPQFGGFGNLPGPLGVGSLQPA
QQVLTQPVGFGQGQQFLPVHAQNPGAFVQNPAGVLPRAYPDNHLGQVDVNELFSKLLKTG
ILKLAQPDSASTQVNEVSTQPAPEDEDDDPNEDQDVPDLTNFTVEELKQRYDSVINRLYT
GIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIAD
LEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGADESCEICQEQFEQYWDEEEE
EWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPIENPLNMMLSIVKSEVQEPCD
SPKVKEEPGDTPPACTEEGTVTSTEIKTESGPVESV
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcggccgaggccgcccgggacgacgcctgtcgggattaccagtcctccctc
gaagacctcaccttcaacagcaagccgcacatcaacatgctcaccatcctggccgaggag
aacctgcccttcgccaaggagatcgtctcgctcatcgaggcccaaaccgccaaggctcct
tctactgagaagcttcccgttatgtaccttatggattccattgtgaagaatgtgggaaga
gaatatcttactgcctttactaaaaacctagttgcgacatttatttgtgtgtttgaaaag
gtggacgaaaacactaggaaaagtttatttaaattacgttccacatgggatgaaatattc
cctttgaagaaactctatgccctggatgtcagagtcaactcattagatcctgcttggcca
attaaacctctgccccccaatgtgaacacttctagcatccacgtgaatccgaagttttta
agtaaatcgccggatgaacccccaacaccaagcccaaaggtcagctcgcctggcatctcc
acacctccgattgtccctgatatacaaaagaatttggcgaaagagcaattgataaggcaa
cagctgctggcgaaacagaaacagttgctggagcttcaacagaaaaaactggagctggag
ctagagcaaactaaagcccaactggccgtttcccttagcgttcagcaaggaacatccgcc
atgggtccagttcccgcaccttccaaaatacacgtaccgccggcggcccacggggccggt
aaatcttcccaacaggtttctgtgccgccggaaaaaaagcatccctctccaccgtcccag
ctccaggacgtcaagctgaccaacagagaccctcgtctcaataggatgagccagcactct
tctcacgctaaagatccgagccacaggaaagagtttccggccaacgccgtgaaccagtcg
gagagcaaagtgggcaaggccgtccccacggaaaaacagaactccaccaagccagagaaa
atgaaatcgagtgaaaaaatccccaagaaggaagccgaccaatttgacgcgaagtccaag
tccccgtctcccctgaaaaacaaagggtcccacgcgaaagaggtcaagaatcaggagccc
gacggtctgcgggcctcggagataagtaagagggacccgagactgaagaagcacctgcag
gataagcccgacggcaaggacgacgagccaaaggagaagagaaaaagcatcgagaagaag
gacaaagaggagcacgccaagtcctccgaacacagaccggccggcgggagaagcaaagtg
ataaacggcgtggtgcagaagcaagaggccagcccggaagaggccgacaaggcggcggcc
aaagcgggccggtcgagcgccaggaagcggtctcggtcgcgctccccaaagtcgcgctcc
cccatcacgcactccccaaagcggagggagaggcgctcgcccaagcgccggcagaggagc
ctctcccccacctccaccccgaaaccggggaagccccgcccgtccagcgccaagcaggcc
cacgcggaagagttcggccaagcggccagggaagaaaggaaccagaacaagaggagcggg
aagcaagaggcgcgggatccccgcagggtgaagaagagccaggaggagaggccgcaggat
gccgccagtcagcactcctccaagtcgggctccgaaccgaaggagaacgtggaaaactgg
ccgggttccaaatccgccaaaaggtggaaatccggctgggaagaaaacaaaaacttgccg
cagggcgaagaccaccagggacttagcaaatcgcctcatctgaggcacagggagagctgg
gccggcgccaagggaatcttgtcgcctcgggccccgaagcaacagcaccgactgagtgtg
gacgccaatcttcagatccccaaagagttaacttcggccagcaagagagaattactgaaa
aaggccaacgaacgcctgacctccggtgaaatctcccaggatgagtttctcgtggtggct
caccagatccgccagcttttccagtaccaggaagggaaacaccggtgcaacgtgtgggat
agccctactgaagagaatcagggcggactgaagaagaagcctctcctgtctgacgccgag
ctcacctactacgaacacaaagcgaagttgaaacggacccaggttcagcattccttcccg
aggctggatctgttggaccccgacatcttcgactatcatctgactgacgccttgctgtcg
ggaatagagtgtgagcaggccaaaagcaagcactcgagtcgcggggggagcggacagttc
gacagaaaagagccgttcagcgaaagatccaggcggcactctcctattcccgggagtcgg
gcttttggcgagaacctttcgcccctggagagtcggaggagacacgaagaacaggtctcc
gtcaaaggtgcccgagaggagcagaggtctcccttcaacgatcgatttgccctgaagagg
cccaggtacgaggattccgagaaagcattcgccgagagtcccgcgtcgagattcgccggc
ctcgataccaatcagagactgacggccctggccgaagaccgaccgctgttcgacggacct
tcgaggcaacccgtgacgaggggggagggtcccaccaagattctctttgagggacccaac
aagttgaactccagactggaaggcccgccgacgccggggtctctgcggttcgaggggccc
tccggccagctgggagccgggggcccgatgcgattcgaggggccgcagggccagctcggc
ggccacctgcgcttcgagggcccccagggccagggaggcgcccctctgcggttcgagggc
ccgctcggtcaggggggaggaggcgggggcttgcggttcgaggggcccgtggggcagtcg
gtcggcggcctccggttcgaaggcccccggggtcagctggtgggcggcctcagattcgag
ggaccccacggccagcccgtcggcctcaggttcgaaggcgcccggggccagcccgtgggc
gggctccggttcgaggggccccacggccagcccgtgggcgggctccggttcgagggaccc
cacggccagcccggcggcgggattcggttcgagggccctctgctccagcaggggggcggc
ctgaggttcgaggggccccacggccagtccggggccgggatgaggttcgacgggccgcac
ggtcagctcggcggcggtctgaggctcgaggggcccatcgggcaacccgccggggggatg
aggttcgaggggcccctggtccagcaggggggcgggatccggttcgaggggccttcggtc
cagggcggcggcctgaggttcgaggggcccctgggacagagcggtccccggttcgacggc
tgccacacggcgcggttcgacggccagccgggccagccgtccctcctgccgagactggac
gggatgcacggccagcccgggccccggttcgagagggcgccggggcagcaggccctgcag
aggctcgacgggcagccggtccagcccaggttcgacccgcaagtcccgcagcggttcgag
gggccgcgccagccggcctcccggttcgacctcgccctcggacttcagggcgggcggttt
gacggccatcaccccgggcagagactcgaggcggcggcgttcggacaggcgggccccttc
ggcgagccccccggaggcgccttctccccggcccagggcctgcccttccagagacacgag
cagatgttcgacggcccgcgggggccgagcttcaacggcccgcccggccccggcgtgcag
aacttccccctgaacagagcctccggacactttttcgaggagaagaaccttcagggccct
cagttcggcggcttcggcaacttgcccggccctctgggagtggggagcctccagccggct
cagcaggtcctgactcagcccgtaggttttggccaagggcaacagttcttacctgtccac
gcgcaaaatcctggtgcattcgttcagaatccagcaggggtcctgccacgtgcataccct
gataaccatcttggccaggtggatgtaaatgaattattttccaaactgctcaagacggga
atcctcaagttggcccagcctgattctgcttcgacccaagtgaatgaagtttctactcaa
cctgcccctgaggatgaagacgacgatccaaatgaagatcaggatgttccagacctcact
aatttcacagtcgaagaattgaaacaacgttacgacagcgttataaatcgactgtacact
gggattcagtgttattcctgtggaatgaggtttaccacgtctcagacggatgtgtacgca
gatcacttggactggcattatagacaaaatagaaccgaaaaggatgtcagcaggaaggtt
acccacagacgatggtactacagtttaacggactggatagaatttgaggaaatcgctgat
ttggaagaacgggcaaagagtcaattctttgaaaaagtgcatgaggaggttgtgctgaaa
acccaggaagctgctaaagaaaaggaatttcagagtgttcctgccggacctgctggcgca
gatgagagctgcgaaatctgccaggaacaatttgagcagtactgggatgaggaagaggag
gagtggcacctcaaaaatgccattcgggtcgatggaaagatttaccatccgtcgtgttac
gaagactatcaaaatacctcttcgtttgactgtacgccatctcccagcaagacacccatc
gaaaaccccttgaacatgatgttgagcatcgtcaaaagcgaagtacaggaaccctgtgat
agccccaaagttaaagaagaacctggtgacaccccaccagcctgtacagaagagggcaca
gtcacatccacagaaataaaaacagaatcggggccggtggaatcggtttaa
DBGET
integrated database retrieval system
