Ornithorhynchus anatinus (platypus): 100086055
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Entry
100086055 CDS
T01045
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03013
Nucleocytoplasmic transport
oaa03015
mRNA surveillance pathway
oaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100086055 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
100086055 (DDX39B)
03015 mRNA surveillance pathway
100086055 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oaa03019
]
100086055 (DDX39B)
03041 Spliceosome [BR:
oaa03041
]
100086055 (DDX39B)
Enzymes [BR:
oaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100086055 (DDX39B)
Messenger RNA biogenesis [BR:
oaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100086055 (DDX39B)
Spliceosome [BR:
oaa03041
]
Complex C
Other components
EJC/TREX
100086055 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100086055 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100086055
NCBI-ProteinID:
XP_028911741
Ensembl:
ENSOANG00000008361
UniProt:
F7CEC6
LinkDB
All DBs
Position
X5:8155761..8163521
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacgacgtggacaacgagctgctggactatgaggacgatgaggtggagacg
gccgctgggggggacggggcggaggcccccgccaagaaggacgtgaagggctcctatgtc
tccatccacagctctggcttccgtgatttcctgctcaaaccggagctgctccgcgccatc
gtggactgtggcttcgagcatccctctgaagtgcaacacgagtgcatcccccaggccatc
cttggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtgtttgtg
ctggccacgttgcagcagctggagccagtcaccggccaggtatctgtgctggtgatgtgt
cacacccgggagctggccttccagatcagcaaagagtacgagcggttctccaagtacatg
cccaacgtcaaggtggcggtattcttcgggggcttgtcgatcaagaaggatgaggaggtg
ctgaaaaagaactgcccccacatcgtggtgggcaccccgggccgcatcctggccctggcc
cgcaacaagagcctcaacctgaagcacattaaacacttcatcctggacgagtgtgacaag
atgctcgaacagctcgacatgcgtcgggatgtccaggagattttccgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccctgagcaaagaaatccggcccgtctgccgc
aagttcatgcaagatcccatggagatctttgtggatgacgagacgaagctcaccctgcac
gggctgcagcagtattacgtcaagctgaaggacaacgagaagaatcgcaagctcttcgac
ctcctggacgtccttgagttcaaccaggtggtgatcttcgtgaagtcagtgcagcgctgt
atcgccctggcgcagctcctggtggagcagaacttccccgccattgccatccaccgtggc
atgccccaggaggagcgactgtcccggtatcagcagtttaaggatttccagcggcggatc
ctggtggccaccaacctcttcggccgagggatggacatcgagcgggtcaacatcgccttt
aactacgacatgcccgaggactcggacacctacctgcatcgggtggcccgggccggccgg
ttcggcacaaaaggtctggccattacgttcgtgtccgacgagaatgacgccaagatcctc
aacgacgtgcaggatcgcttcgaggtcaacatcagcgagctgcccgatgagatcgacatc
tcctcctacattgaacagacccggtag
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