KEGG   Ornithorhynchus anatinus (platypus): 100091872
Entry
100091872         CDS       T01045                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
oaa  Ornithorhynchus anatinus (platypus)
Pathway
oaa03018  RNA degradation
oaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100091872 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100091872 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oaa03019]
    100091872 (LSM4)
   03041 Spliceosome [BR:oaa03041]
    100091872 (LSM4)
Messenger RNA biogenesis [BR:oaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100091872 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100091872 (LSM4)
Spliceosome [BR:oaa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100091872 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100091872
NCBI-ProteinID: XP_028907418
Ensembl: ENSOANG00000007434
UniProt: F6XTR8
LinkDB
Position
X1:complement(113592994..113605243)
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQQKQQKGRGVGGVGRGVFGGRGRGGI
PGSGRGQQEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcttcccttgtcattactgaagactgcccagaatcaccctatgttggtggaactgaaa
aatggtgaaacttataatggacatcttgtgagttgtgacaactggatgaacattaatttg
agagaagtcatctgcacatcaagggatggtgataaattttggcgcatgccagaatgttat
atccgcggcagtacgattaaatacttgcgtattcctgatgagattattgacatggtgaag
gaggaggtggtgtccaagggcaggggccgtggtgggatgcaacagcagaagcagcaaaag
ggacgaggtgttggcggcgttgggcgaggtgtgtttggaggacgtggtcgagggggaata
ccgggcagtggaagaggacagcaggaaaagaagccaggcagacaggctggaaagcagtga

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