Oxynema acuminatum: Oscil6304_1152
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Entry
Oscil6304_1152 CDS
T02368
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
oac
Oxynema acuminatum
Brite
KEGG Orthology (KO) [BR:
oac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oac03016
]
Oscil6304_1152
Enzymes [BR:
oac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Oscil6304_1152
Transfer RNA biogenesis [BR:
oac03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Oscil6304_1152
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
YnaL
Motif
Other DBs
NCBI-ProteinID:
AFY80878
UniProt:
K9TEP4
LinkDB
All DBs
Position
complement(1418287..1420302)
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AA seq
671 aa
AA seq
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MEKGTLLEYRLNGDRRLAVADRPDGKKNWVVVDENGQANSIPPRQIAYEIGGGSYKPSDI
PNFRKEVEKYLDPDSLEVAWEILVEENRGVDPGEMAMLLFSENEPPNRYASYLLLSEDKL
YFKQKGDRYEPRSATQVAELKHQQEVETQRQQEWGNFVARVQQRLAGDLVEWENSDRIRI
EALEKYAALAEEARERNQAKETLSSLGRTDTPQAAFKLLVELKVWSEHENLFLRRTQIPT
HFSTKVLEVAQRCLNFPPPDLDANNRLDLTHLKVYTIDDESTLEIDDGVSLEYLEDGRQR
LWIHIADPTRLLSPGDELDLEARRRSTTVYLPTGMVPMFPHELATGPMSLVQSQLCAALS
FAVILEESGAVAEYSIHVSTIKPTYRLTYDDVDEMLQLGLQAEPEISAIAAWSKRRHAWR
VSQGAISISMPDSSIKVDENEEITVQLLEDCPSRQLVAEMMILAGELGARYAQTHNIPVP
FRGQPQPELPPEEELLILPAGPVRSSAIRRCMPKSEMATTPSRHASLGLDAYIQVTSPIR
RYSDLLAHFQIKAHLRGDPLPLAVLEVQEIVQSIGMAVREASLVERQTNRYWILEYLRRH
TGEVWQAVVLRWLREDENLGLILLEDIGIELAWRFPRAVSLGDRLDLQVAYADPREDQIH
FQEMVYQTAQL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggaacgctgctcgaatatcggctgaacggggaccgacgtctagctgtagcc
gaccgtccggatggcaagaaaaactgggttgtggtggatgaaaatggtcaagccaatagc
attccacccagacaaatcgcctacgaaatcggtggaggttcctataaaccctccgatatc
ccgaacttccgcaaggaagtagagaaatatctcgacccggatagtttagaggtggcgtgg
gaaatcttggtcgaggaaaaccggggggttgaccccggggaaatggcgatgttgctcttt
tcagaaaatgagccgcctaatcgctatgcctcatacttattgctgtctgaggataagctc
tatttcaagcaaaaaggggaccgttacgagccgcgatcggccacccaggttgcggaactc
aagcaccaacaggaagtagaaacccaacgacagcaagagtggggcaattttgtagcacgg
gtgcagcaacgactcgccggggatctggtggagtgggaaaatagcgatcgcatccgcatt
gaagccttagaaaaatatgccgccttggcagaagaagcgcgagaacgcaatcaggccaag
gaaactctctcatccctaggccggaccgacacgccccaagctgcctttaagcttttggta
gagttaaaggtgtggtctgaacacgaaaatctatttttacggcgaactcagatcccaact
catttttctaccaaggtactggaagtggcccaacggtgtttgaattttccgcctcctgat
ctggatgcgaacaatcgcctagatttgacccatctcaaggtctataccatcgatgatgaa
agcaccctagaaatcgatgacggggtgagcttggaatacctggaagatggtcgtcaacgg
ctgtggattcatattgcagacccaacccgcttgctgtctccgggagatgaattggattta
gaggcccgtcggcgcagcactacggtttatctgccgacggggatggtgccaatgtttcct
catgaattggcaacgggtccgatgagtttggtgcagtcgcaactttgcgcggccctgagt
tttgcggtgattttagaggagagtggcgcggtagcggaatatagcatccatgtctcgacg
attaagccgacttatcggttgacttatgatgatgtggatgagatgttgcaattggggttg
caagcggaaccggaaattagcgcgatcgccgcttggtccaaacgtcgccatgcttggcgg
gtctcccaaggggccattagtatttccatgccggattcctccatcaaggtagatgagaat
gaggaaattacggtccaactgctggaagattgtccgtctcggcaattggtggcggaaatg
atgattttggcgggggaattgggtgcacgctacgcgcaaacccacaatattccggtccca
tttcggggtcaaccccagccggaattgcctcctgaagaggaattgctgattttaccggcg
ggtccggtgcgatcgagtgccatccggcgctgtatgccaaaaagcgagatggcaacgact
ccctcccgtcatgccagtctggggttggatgcttatatccaggtgacttctccgattcgt
cgctatagcgatttattggctcatttccagattaaagcgcacctgcggggggacccgctg
ccgttggcggtgttagaggtgcaggaaattgtccagagtattgggatggcggtgcgagag
gcatcgttggtggaacgccaaaccaatcggtattggattttggaatatctgcgccgtcac
acgggagaagtttggcaggcggtggtgttgcgctggttgcgtgaagatgaaaatctcggg
ttgattctgttggaagatattggcatcgagttggcatggcgtttccctcgggcggtgtcc
ctgggcgatcgcctggatctgcaagttgcttatgccgacccccgtgaggatcagatccat
ttccaagagatggtgtatcaaacggcgcaattataa
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