Oscillatoria acuminata: Oscil6304_2411
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Entry
Oscil6304_2411 CDS
T02368
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
oac
Oscillatoria acuminata
Pathway
oac03410
Base excision repair
oac03430
Mismatch repair
oac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Oscil6304_2411
03430 Mismatch repair
Oscil6304_2411
03440 Homologous recombination
Oscil6304_2411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oac03400
]
Oscil6304_2411
DNA repair and recombination proteins [BR:
oac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Oscil6304_2411
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Oscil6304_2411
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Oscil6304_2411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ThiG
Toprim
OTCace
DUF2399
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
AFY82034
UniProt:
K9TJ32
LinkDB
All DBs
Position
complement(2965264..2967726)
Genome browser
AA seq
820 aa
AA seq
DB search
MVPSTAIRLPNHRWQIYPQKPELAQQLAEAVALPPILAQALIDRGIETVEAVQAFLDPES
VNLPPPVDEFPDLALTVELLQKAIAKGSKIAICGDYDADGMTSTALLMRALRALGANVDY
AIPSRMAEGYGINERIVREFHGEGVKIILTVDNGIAAVKPIALARELGMDAIITDHHELP
DELPPATAILNPKLIREASPYRGVAGVGVAYILAICLAQKLGQSQSLIKPLRELLTLGTI
ADLAPLTGVNRRWVKRGLRQLPESELAGVQALIQVSGASSSGKTMKPDEIGFRLGPRINA
VGRIGDPQVAIELLTTDDPGIALTRAMQCEQINQDRQQMCETIEAEAIAWVESSGMDYLG
SRVLVVVQPGWHHGTIGIVASRLVERYGVPVFIGTYEDDRQEHIRGSARSIPEFHVFEAM
QHCDRWLGKYGGHRAAGGFTLSAQNLDGFRQGLSEFAHGCLEPHHLKPAIAINALAEFEQ
IDLDLYREIDRLHPCGIENPSPVFWTPNVEVVDQRIVGKGHIKVTLESSTHSFHPNSSKI
ATPRRIQGIAWRWGDYFPLPRYIDVAYKLRENTWNGQTNVELELISARLPENEESRPREI
IRPSVPSSPPVRRSLKTPPQPTVSESLPRTTVGVSASVVTPVIPEAPPVTVDPEWLSGIS
LPSLLTHLSGRVLFYGAGRPEIGETDCEIEWNFPKRPCDTLLLWTLPPSGTHLQWLLARG
MPRQVYVYNHLPPLPSPMQLRSHLRDRLQDVGTQPLNLLHLGQELWVAPSTLLAALRELG
DSYPEFPPTQTLDRELERLYRWYAFPPGKLAQINWRSPLH
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggttccgagtaccgcgatccgtttacccaatcacaggtggcagatttaccctcaaaaa
cccgaactcgcccagcagcttgctgaggcagtggcgctgccaccgattttggcgcaagca
ttgattgatcgcgggattgaaaccgtagaagcggtgcaggcatttttagacccggaatcg
gtgaatttgcctcctccggtggatgagttcccggacttagcattgacggtagaactctta
caaaaggcgatcgccaaggggtcgaaaattgcgatttgtggcgactatgatgccgatggc
atgaccagtaccgccctgttaatgcgggcattacgggcattaggggcaaatgtagattat
gcgattcccagtcgcatggcagaaggttatggcatcaatgagcggattgtccgagaattc
cacggggaaggggtgaaaattattttaaccgtggataatggcatcgctgcggttaaaccc
atcgccctcgcccgagaattggggatggatgcaattattacggaccaccatgaacttccg
gatgaactgcctccagcaacagcaattcttaatccgaaactgattcgagaagcatctccc
tatcgcggagttgctggggtgggcgtggcctatattttagccatttgtttagcacaaaaa
ttaggtcaatctcaatcgttaattaaacctttacgggaattattaaccctgggaactatt
gcagatttagccccgttaacaggagtgaatcgccgctgggttaaacgggggttgcgccaa
ttaccggagtcggagttggcgggggtacaagcgttaattcaggtttccggtgcgagtagc
agtgggaaaacgatgaaaccggatgaaatcgggtttcggttaggaccgcgcattaatgcg
gtgggacggattggtgacccgcaagttgcgatcgaactgctgacgacggatgatccaggg
attgcattaactcgggcgatgcagtgcgaacaaatcaatcaggaccgtcagcagatgtgc
gaaactatcgaggcggaggcgatcgcctgggttgaaagcagtggcatggattatttaggc
agtcgggtgttagtggtggtccaaccgggttggcatcatggtactattggcattgtggcc
tctcgcttggtagaacgctacggtgtgccggtatttattggcacttatgaggacgatcgc
caggaacatatacgcggatcggcgcggagtattccagaatttcatgtgtttgaggcgatg
cagcattgcgatcgctggttgggaaaatatggcggacatcgcgcagcagggggatttacc
ttaagtgcccagaacttagacgggttccgccaggggttgagtgagtttgctcatggatgt
ctggaacctcatcacctcaaaccggcgatcgccattaatgccctggcggaatttgagcaa
attgacctggatttataccgggaaatcgatcgcctccacccctgcggcattgagaaccca
tccccggtattctggacgccgaatgtagaagtggtggaccagcgtatcgtcggcaaagga
catatcaaagttaccctagaaagctcaactcacagtttccaccccaattcgtcaaaaatt
gctacgccgcgtcggattcaagggattgcatggcgttggggggattattttcccctaccg
cgatacattgatgtggcctataagttgcgggaaaatacttggaatggtcaaacgaacgta
gaattggaactgatcagcgctcgtctgcctgagaacgaagagagtcgccctcgtgagatc
atccgaccctctgtgccgtcttcacccccagtccggcgatcgctgaaaacgccaccccaa
cccacagtctcggaatcccttcctcggacaacggtgggagtttctgcctcggtggtgacg
ccggtgatccccgaagcacctccggttacggttgatccggaatggttatccgggatttcc
ttgccatccttactcactcacttatcgggtcgggtgttgttctatggtgccggtagaccg
gaaattggcgagacagattgtgaaattgagtggaactttcccaagcgtccctgtgatacg
ttgttgctctggacgttacccccttcgggtacacatctgcaatggttactggcgagaggg
atgccgcgtcaggtgtatgtttacaatcacttaccgcctttgccgtcaccgatgcagtta
agatcgcacctgcgcgatcgcctccaggatgtcgggactcaacccttaaacctgttacac
ctggggcaagaattgtgggtggcaccgagtaccttgctggctgctttacgggaattgggc
gattcctatccggaatttcctcccacccaaaccctcgatcgcgaattagagcggttgtat
cggtggtatgccttccccccagggaaattagcacaaattaattggcgatcgcccttgcat
tag
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