Oxynema acuminatum: Oscil6304_2475
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Entry
Oscil6304_2475 CDS
T02368
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oac
Oxynema acuminatum
Brite
KEGG Orthology (KO) [BR:
oac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oac03016
]
Oscil6304_2475
Enzymes [BR:
oac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Oscil6304_2475
Transfer RNA biogenesis [BR:
oac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Oscil6304_2475
Prokaryotic type
tRNA splicing ligases
Oscil6304_2475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFY82094
UniProt:
K9TJ95
LinkDB
All DBs
Position
3054564..3056015
Genome browser
AA seq
483 aa
AA seq
DB search
MKPLERISDYLWEIPTSYKPGMRVPARIYATEQLIQQMDEAVADQISNVATLPGITQSAL
CMPDGHFGYGFPIGGVAAMDIAEGGVISPGGIGFDINCGMRLVVTNLTEKEVKPQIKKLI
DKLYERVPAGVGSKGFVKVSRNEFRQVVQEGAKWCINQGYGWEEDLELTEENGCIAGAYA
SKISDKAIDRGCNQIGTLGSGNHYLEIQVARPENIVNKELAEAFGITIPNQVVVMFHCGS
RGFGHQVATDYLQVFLKVMESKYGINILDRELACAPFNSPEGQDYFAAMKCGLNMSFANR
QVILHRIREVFSDVFGKSAEALGMHQVYDVSHNTAKLEEHIVDGKAKSLLVHRKGSTRAF
GPGMEGIPDRYKPYGQPVILGGSMETGSYLLAGVSTGAQSFFSTAHGSGRTMSRTKARKQ
WNGEQLQKDMQKQGIYIRTTSWRGLAEEAGGAYKDVDAVVKATELAGLSKRVVRLVPIGN
VKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctttagaacgaatttctgattatctctgggaaattcccacctcctacaaaccc
ggaatgcgtgttcccgcccgaatttatgccacggaacagttaattcagcagatggatgaa
gcggtggcggaccaaatcagcaatgtggcaaccctgccgggaattacccaaagtgcctta
tgtatgcctgatggtcactttggctatggatttcccattggcggtgttgctgcaatggat
attgccgaagggggagtgatttctcctggaggaattggctttgatattaactgtggaatg
cgcctagtcgtcaccaatctcaccgaaaaagaggtcaaacctcagattaaaaaattaatc
gataagctgtacgaacgagttcccgcaggagtaggaagtaaaggctttgttaaagtctct
cgcaatgaatttcgccaagtggtccaagagggcgcaaagtggtgtattaaccagggttat
ggatgggaagaggatttagaactcaccgaagaaaatggctgtattgccggggcttatgcc
tctaaaattagcgacaaagccatcgatcgcggttgcaatcaaatcggaaccttggggtcc
ggtaaccactatttagaaattcaagtcgcccgtcctgaaaatattgttaacaaagaatta
gccgaagcctttgggattaccattcccaatcaagtggtagtaatgttccactgtggcagt
cgcggatttgggcatcaggtggcgacagactatctgcaagtctttctcaaagttatggaa
tctaaatatggaattaacattttagatcgagaattggcttgtgcaccgtttaattctccc
gaagggcaggattattttgccgccatgaaatgtggattaaatatgtcttttgccaaccga
caagtgattttacaccggattcgtgaggtgttttcggatgtctttggaaagtccgctgaa
gcactaggaatgcatcaagtttacgatgtgtctcataatacggccaaattagaagagcat
atcgtcgatggcaaagcgaaatcgcttctggtccatcgcaaaggttccactcgcgctttt
ggtccgggaatggaaggcattccagaccgctataaaccttatggtcagccggtgatttta
ggcggcagtatggaaaccggatcctatctgttagcgggggtatccacaggtgctcaaagt
ttctttagtaccgcccacggtagcggacgcaccatgagtcgaaccaaggcccgaaaacag
tggaatggggaacaattacaaaaagatatgcagaagcaagggatttacattagaaccacc
tcctggcggggtttagccgaggaagcaggaggcgcttataaggatgtggatgcagtggtc
aaagccacggaattagcgggattaagtaagcgagtagttcgcttagttccgattggaaat
gtcaaggggtaa
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