Oleispira antarctica: OLEAN_C02370
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Entry
OLEAN_C02370 CDS
T04028
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
oai
Oleispira antarctica
Pathway
oai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLEAN_C02370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oai03021
]
OLEAN_C02370 (rpoB)
03400 DNA repair and recombination proteins [BR:
oai03400
]
OLEAN_C02370 (rpoB)
Enzymes [BR:
oai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLEAN_C02370 (rpoB)
Transcription machinery [BR:
oai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLEAN_C02370 (rpoB)
DNA repair and recombination proteins [BR:
oai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLEAN_C02370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
NQRA_2nd
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
CCK74413
UniProt:
R4YMW0
LinkDB
All DBs
Position
276192..280265
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPTVMDVPFLLAIQIDSYRKFLSLVQQDGSDDIGLNAAFRSVF
PIVSYSGNAALEYVSYRLGTPTFDEKECMSRGVTFAAPLRVKVRLIIYDKDSSTKAIKDI
KEQEVYMGEMPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKLLYNARVI
PYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALDYSTQEVLEMFFDNDTYTLSTDQA
KLKLIPSRLRGETAAFDIKDDKDNVIVESGRRITARHIRQLEKAGVEELPVPSEYLYGKA
LAKDIIDAATGEVIAECNAELTEEVLDALRAAGIETFETIYTNELDCGSFVSDTLRIDPT
RNRLEALVEIYRMMRPGEPPTKESAEALFENLFFSEERYDLSAVGRMKFNRRIGREETTG
AGTLGKDDIIAVLKTLINIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVR
ERLSMAESEGLMPQDLINAKPVAAAMKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPG
GLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLATYARTNNYGFLETPFRIVKD
GLISDEVIYVSAIEEADHVIAQASVPVDENNNLLGDLIPVRHKNDSTMMSPASVTLMDVS
AQQMVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLIAQKPLVGTGIESAVARDSGVCA
VALRGGVIESVDASRIVVKANDDETPAGDAGVDIYNLTKYTRSNQNTCINQKPLVKAGDM
VVRGDIMADGPSIDLGELALGQNFRIAFMPWNGYNFEDSILLSERVAQEDRLTTIHIQEL
TCVARDTKLGAEEVTSDIPNVGESALGKLDESGIVYIGAEVKAGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVKTGTTGTIIDVQVFTRDGVEKDQRAREIEQMQLDEV
RKDLNEELRIVQGATFERLQRALVGAKVNAATGLAKGDTLTAEYLETLVADDWFRIRPQD
EALAELIEQAEQQLADRAKELDDKFEDKKRKLQSGDDLAPGVLKIVKVYLAIKRKIQPGD
KMAGRHGNKGVISAVMPVEDMPYDAQGTPVDIVLNPLGVPSRMNVGQVMEIHLGLAAKGL
GEKIDAMLKQQRAVADIRALLEEIYNGDDTYTKENLESFSDEEILELSHNLRGGVPMGTQ
AFDGAKEVEIKRMLRLADQPESGQMTLFDGRTGNSFDRPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELINE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaagaaacgaatccgtaaggatttcggaaaattaccaacc
gtgatggatgtgccttttttattggcaattcagatcgattcatatcgcaagttcttgtcg
ttagttcagcaagacggctctgacgatattggtcttaatgcagcatttagatctgtattc
ccgatcgtaagttattcgggcaatgcggcattagaatatgtgagctaccgcttaggcacg
ccgacattcgatgaaaaagaatgtatgtcgcgtggcgttacttttgcagcgcctttgcgc
gttaaagtacgcttgatcatttatgataaagactcttcaacaaaagcgattaaagatatt
aaggaacaggaagtctacatgggcgaaatgcctctgatgactgacaatggtacctttatc
attaatggtactgagcgcgtaatcgtatctcagttacaccgttcccctggcgtgttctat
gatcacgacaaaggtaagacgcattcctctgggaagttgttatacaacgcccgtgtaatt
ccttaccgtggttcttggttggactttgagttcgatccgaaagaccttgtctatgtacgt
attgaccgtcgtcgtaagcttcctgcaactatcttattgcgtgcgctagattacagcact
caagaagtattggagatgttcttcgataacgatacttacactttgtctactgatcaggct
aagttgaaattgataccttcgcgtttacgtggtgaaactgcggcgtttgatatcaaagat
gacaaagacaacgttattgtagaaagtggccgtcgtattactgcgcgtcacattcgtcaa
ttagagaaagctggcgtagaggaacttcctgtaccgtctgaatacttatatggcaaagca
cttgcaaaagacatcattgatgcagcaactggcgaagtcattgcagaatgtaatgcagag
ttaacagaagaagtattagacgctctacgtgcggccggtatcgaaactttcgaaactatc
tataccaacgaactagattgtggatcatttgtatccgataccttgcgtatcgatcctact
cgaaatcgtttagaagcccttgttgaaatctatcgtatgatgcgcccaggtgagccacca
acgaaagaatcagcagaagccttgtttgagaacttgttcttctctgaagagcgttatgac
ttatccgctgtaggtcgtatgaagttcaaccgtcgcattggtcgtgaagaaacgacaggc
gcgggcacattaggcaaagatgacatcattgcggtacttaaaactctgatcaatattcgt
aatggtcaaggtgaagtggacgatattgaccacttgggtaaccgtcgtattcgttctgta
ggtgaaatggcagagaaccaattccgtgttggtcttgtacgtgttgagcgtgccgttcgt
gaacgtttatcaatggcagaatctgaaggcttgatgccacaagatttgattaacgcaaaa
cctgttgcagcagcgatgaaagagttctttggctcttcacagttgtctcagtttatggat
caaaacaacccgctatcagaagtgacgcacaaacgtcgtatttctgcattaggacctggt
ggtttgactcgtgagcgtgctggttttgaggtgcgagatgtacatgcgactcactatggt
cgagtatgtccgattgaaacacctgaagggccaaacattggtctgattaactcattggca
acttatgcgcgtactaacaattacggtttcttggaaacaccattccgtattgttaaagat
ggcctaattagtgatgaagtgatttatgtttctgcaattgaagaagctgatcacgttatt
gcacaggcatctgtaccagttgatgagaataacaatttattaggcgacttgattcctgtt
cgtcataagaacgattccaccatgatgtcaccggcttcggtaacattaatggatgtctcg
gctcagcagatggtttccattgctgcttccttgattccgttcttagagcacgatgatgct
aaccgagcattgatgggatcgaacatgcaacgtcaggctgtgccgacgttaattgctcaa
aagcctcttgtaggtactggtattgagagcgctgttgctcgtgattctggtgtatgtgcg
gttgcccttcgtggtggtgtgattgagtctgtagacgcaagccgcatcgttgtgaaagca
aacgacgacgaaactcctgcaggtgatgcaggtgtggatatctacaatctaaccaaatac
acacgttctaaccagaacacctgtattaaccagaagccgcttgtaaaagcaggtgacatg
gttgtacgtggtgacatcatggcagacggtccatctatcgatttaggtgagctagccctt
ggtcagaacttccgcatcgcatttatgccgtggaatggttacaacttcgaagattcgatc
ttactttcagagcgtgttgctcaggaagatcgtctaacgacgattcacatccaggaatta
acctgtgttgctcgtgatactaagttaggtgctgaagaagttacttcagatattccaaac
gtaggtgagtctgcattaggtaagttggatgagtctggtattgtttacatcggtgctgaa
gttaaagccggtgatattctagttggtaaagtgacacctaaaggtgaaacacagcttacg
ccagaagaaaaactattacgtgccatctttggtgaaaaggcttctgacgttaaagatact
tctttacgtgttaagaccggcaccacaggtacgattattgacgtacaagtcttcacccgt
gacggtgttgaaaaagaccagcgagctcgtgaaattgagcaaatgcagctggacgaagta
cgcaaagatttgaatgaagaattacgcattgttcaaggtgcaacctttgagcgtttacag
cgtgccctagttggcgcaaaagttaacgcagcaacaggtttggctaaaggcgatacgtta
acagctgaatacttagaaactctcgttgcagatgattggttccgcattcgtccacaagac
gaagcattagcagagcttattgagcaagcagagcagcagctagcagaccgcgctaaagaa
ttggacgataagttcgaagacaaaaagcgtaagttgcaaagcggtgatgatctagcacca
ggcgttcttaagattgttaaggtttacttagcgattaaacggaaaatccagccaggtgat
aagatggctggacgtcacggtaacaagggtgttatctcagcggttatgccggttgaagat
atgccatacgatgcacagggtacccctgttgatatcgtcttgaacccgctgggtgtacct
tcgcgaatgaacgttggtcaggtgatggaaattcacttgggtctagcggctaaaggctta
ggcgagaagatcgacgcaatgttgaagcaacagcgtgctgttgccgacattcgtgcactg
cttgaagaaatttataacggtgacgatacgtatacgaaggaaaacctagaaagcttcagt
gatgaagagattctagagctttctcataacctacgtggcggtgtacctatgggtacgcag
gcattcgatggtgcaaaagaagttgaaatcaagcgtatgttacgcttggccgatcagcct
gaatcaggtcaaatgaccttgtttgatggccgtactggtaactctttcgatcgtccagtg
accgtaggttatatgtacatgcttaagttgaaccacttggttgacgataaaatgcatgct
cgttctactggttcgtacagcctagtaactcagcaaccacttggtggtaaagctcagttt
ggtggccagcgtttcggggagatggaagtatgggcactagaagcttatggtgctgcttac
actctacaagagatgttgactgtgaagtcggatgacgttgctggtcgtactaagatgtat
aaaaacatcgtagacggcgatcaccgtatggagcctggcatgccagaatcctttaacgta
ttagttaaagagattcgttcgctgggtatcgacatcgagttaattaacgagtaa
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