Oleispira antarctica: OLEAN_C02380
Help
Entry
OLEAN_C02380 CDS
T04028
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta\'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oai
Oleispira antarctica
Pathway
oai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLEAN_C02380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oai03021
]
OLEAN_C02380 (rpoC)
03400 DNA repair and recombination proteins [BR:
oai03400
]
OLEAN_C02380 (rpoC)
Enzymes [BR:
oai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLEAN_C02380 (rpoC)
Transcription machinery [BR:
oai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLEAN_C02380 (rpoC)
DNA repair and recombination proteins [BR:
oai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLEAN_C02380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCK74414
UniProt:
R4YQM5
LinkDB
All DBs
Position
280328..284554
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLVNFLRNQSNADEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDFECLCGKYKRLKHRGVICEKCGVEVTQSKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVTEPGMTTLEVGQLLNDEQYYEAIEEFGDEFEAKM
GAEAIQGLLSHIILDEEIQRLREEIPATNSETKIKKLSKRLKLLEAFYNSGNNPQWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVERETAEVWDILAEVIREHP
IMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYWMTRERVAAKGEGMFLANLDEVTRAYGSG
MADLQAKVKVRISEVVNDHEGNSVATTKVVDTTIGRALLFRIVPEGLSYDLVNQPMKKKA
ISNLLNTAYRRVGLKDTVIFADQIMYTGFEYATISGVSIGVNDFVIPDAKAVIVAEADAE
VKEIESQFASGLVTQGEKYNKVVDIWSRANEVVAKAMMDNLSTEPVLDRDGNPTDIEQES
FNSVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVQQYFTSTHG
ARKGLADTALKTANSGYLTRRLVDVAQDLVVTESDCGTEHGVEMTPLIEGGDVVVPLGTR
ILGRTVAKDVFKPGSEDEIAVERGTLIDEQWVEKIEAMGIDEVYVRSAITCETRQGICAS
CYGRDLGRGHLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRQSAADSVQVKNKGK
VRLHNMKTVTKETGELVAVSRSGSITLADEHGRERELYKLPYGAVISLKDGDSVEAGQKV
ASWDPHTHPIITEVKGRIQFVGMEEGITINRQVDELTGLSNIEVIDPAVRPAAGKDIRPM
VKLVDDAGEDVMLPGANTPAQYLLPPNALVNHEDGAEVNIGDAIARIPQESSGNKDITGG
LPRVADLFEARKPKEPAILAEISGAVSFGKETKGKKRLVITPTDGADVYEELIPKWRHLN
IFEGEKVEKGEVISDGPMNPHDILRLLGVGELAVYITNEVQEVYRLQGVGINDKHIEVIV
RQMLRKVVIDQPGDSTFIPGEQVEFNAFLEQNDALKTEEKIVAKGQRALLGITKASLATE
SFISAASFQETTRVLTEGSVTGKVDSLRGLKENVVVGRLIPAGTGLAYHKERKRKRDERE
ADKLKAAGGMSASADEVEARLTEAFSDK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttagttaattttcttcgaaatcagtcgaatgctgacgagtttgatgcgatc
cgtattggcttggcatcgccagatatgatccgttcttggtcttatggtgaagttaagaag
ccagagaccatcaactatcgtaccttcaaacctgagcgtgacggtttgttttgtgcgcgt
attttcggcccaattaaagactttgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggcgtaatttgtgagaagtgtggcgtagaagttacacaatctaaagttcgtcgtgat
cgcatgggtcacattgacctagcgagcccagtagcccacatctggttccttaaatcatta
ccatcgcgtattggtttgatgctggatatgacgttacgtgacatcgaacgcattctttat
tatgaatctttcgttgttaccgagccaggtatgaccactcttgaagtcggtcagctattg
aatgacgaacagtactacgaagcgattgaagaattcggcgacgaatttgaagctaaaatg
ggtgctgaagcgattcaaggcttattatctcacatcattttagatgaagagattcagcgt
ttgcgtgaagaaattccagcgacaaactctgaaacaaaaattaagaaattatccaagcgt
cttaagttgttggaagcattctacaactcaggtaataacccgcagtggatgattatgacg
gttctaccagttcttccgccggatcttcgtccgttggtaccgctggatggtggccgtttt
gcgacttctgacttgaacgatttatatcgtcgagtgattaaccgtaacaaccgtttgaaa
cgtcttctagagctaagtgctccagacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gagtctgttgatgcgttgctagataacggtcgtcgcggtcgtgctattacgggttctaac
aaacgtccgcttaaatctcttgccgatatgatcaagggtaaacagggtcgtttccgtcag
aacttattgggtaagcgagtagattactcgggtcgttcggtaattaccgttggtcctaaa
ttacgcttacatcagtgtggtcttcctaagaagatggcattggaattatttaagccattc
atcttcagtaagcttgaacaccgtggtctagcgacaacgattaaagccgctaagaagatg
gttgagcgcgaaactgctgaagtttgggatatccttgctgaagtaattcgtgaacaccca
atcatgttaaaccgtgcaccaacattgcacagattgggtattcaagcgttcgagcctacc
ttgattgaaggtaaagcgattcaattgcacccattggtttgtgcggcatacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttaacaattgaagctcagctagaagct
cgtgccttgatgatggcaacgaacaacgtactatcgccagccaacggtgagccaattatc
gtaccttcgcaggacgttgtattgggtctttactggatgactcgtgagcgtgtagccgcc
aaaggcgaaggcatgttcttggcgaaccttgatgaagtgacgcgtgcttatggcagcggc
atggctgatttacaagccaaagttaaggtgcgtattagcgaagttgttaacgatcacgaa
ggtaatagtgttgcgacaactaaggttgttgatacgacgatcggtcgtgcattgttattc
cgcatcgtaccagaaggtttgtcttacgacttggttaaccaaccaatgaagaagaaggcg
atttctaacttactgaacacggcttatcgtcgcgttggtttgaaagatacggttatcttc
gctgaccagatcatgtatacaggtttcgagtatgcaacgatttctggtgtatcgattggt
gttaacgatttcgttattcctgatgctaaagcggttattgttgctgaagctgatgctgaa
gttaaagaaattgaaagccagtttgcttctggtcttgttactcaaggcgaaaagtacaac
aaggttgttgatatttggtctcgcgctaacgaagtagttgcgaaggcgatgatggacaac
ttgagtactgaaccggttcttgaccgtgacggtaacccaacggacatcgagcaagagtct
tttaactctgtttatatgatggctgactctggcgctcgtggtagcccagctcagattcgt
cagttagcaggtatgcgtggtttgatggccaagccggatggttcgattattgaaacgccg
attgttgctaacttccgtgaaggtttgaacgtacagcagtacttcacctcgactcacggt
gctcgtaaaggtctagccgatacagcattgaagacagcaaactcgggttatttgactcgt
cgtctagtagatgtggcacaagacttggttgttaccgagagcgattgtggtactgagcac
ggcgtagaaatgactccgttaattgaaggcggtgacgtagtagtacctctaggtactcgt
atcttgggtcgtactgttgctaaagacgtattcaagcctggttctgaagatgaaattgct
gttgaacgcggtactttgattgatgagcagtgggtagaaaaaattgaagcaatggggatc
gacgaagtatacgttcgttctgccattacgtgtgaaacccgtcagggtatctgtgctagc
tgttatggtcgtgacctaggtcgtggccatttggttaatgccggtgaagctgttggcgtt
atcgctgcacagtcgatcggtgagccgggtacacagttgacaatgcgtacattccacatt
ggtggtgctgcatctcgtcagtctgctgcggatagcgtacaagttaaaaacaagggtaaa
gttcgtcttcataatatgaagactgtaactaaggaaacaggcgagctagttgctgtatct
cgttctggttcgatcactcttgccgatgagcacggtcgtgagcgtgagctgtataagctt
ccttacggtgcagtgatttcattgaaagatggtgattcggttgaagctggtcagaaagtg
gcaagctgggatccgcacacccacccaattattactgaagtgaaaggtcgcattcagttc
gttggtatggaagaaggtattactattaaccgtcaggttgatgaattaactggcctttca
aacatcgaagtaatcgatccagcggttcgaccagcagcgggtaaagatattcgcccgatg
gttaaattggttgatgacgcaggtgaagacgttatgttgccaggtgctaatacgcctgct
caatatttgttaccacctaacgccttggtaaaccatgaagatggcgctgaagtgaatatt
ggtgatgcaattgcccgtattcctcaagagtcttctggtaacaaagatattacgggtggt
ctaccacgagttgctgacttgttcgaggcgcgtaagccgaaagaacctgcaattcttgct
gagatctctggtgcggtaagttttggtaaggagactaaaggcaagaagcgtttagtgatt
accccaactgacggcgctgatgtttatgaagaactgattcctaagtggcgtcacctgaac
attttcgaaggtgaaaaagttgaaaagggtgaggttatctctgatggcccgatgaaccca
catgacatcttgcgtctattgggcgttggtgagctagctgtttatattacaaacgaagtg
caggaagtatatcgtctgcagggcgttggtattaacgataagcacatcgaagttattgtg
cgtcagatgttacgtaaggttgtgattgatcagccaggtgattcaaccttcattccgggt
gagcaggtagaatttaatgccttccttgaacagaatgatgcattgaagactgaagagaaa
attgtcgctaagggtcaacgtgcgctattgggtatcaccaaagcctctttggcaactgag
tctttcatctcggcagcctcgttccaagaaacaactcgcgtactaaccgaaggttcggta
acgggtaaagttgatagtttgcgtggtctgaaagagaacgtagttgtaggtcgtttgatt
cctgcaggtacgggcttggcttaccacaaagaacgtaagcgtaagcgcgatgagcgtgaa
gctgacaaactgaaagcagccggcggtatgtctgccagtgctgatgaagttgaagcgcgt
ttaactgaagcctttagtgataaataa
DBGET
integrated database retrieval system
