Oleispira antarctica: OLEAN_C15440
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Entry
OLEAN_C15440 CDS
T04028
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oai
Oleispira antarctica
Pathway
oai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OLEAN_C15440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oai03400
]
OLEAN_C15440 (mfd)
Enzymes [BR:
oai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLEAN_C15440 (mfd)
DNA repair and recombination proteins [BR:
oai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OLEAN_C15440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Tex_YqgF
Motif
Other DBs
NCBI-ProteinID:
CCK75720
UniProt:
R4YM27
LinkDB
All DBs
Position
complement(1692329..1695820)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSKPSIASPLFPAIPTKAGDRRFWGALNNSNQALAIASAAQQYLGLTLVITKDTLTAQRL
EEEIAFFAEDLPVLHLPDWEILPYDTFSPHQDIISQRLYTFSQLPLIEHGLLIVPISTLL
HKTAPKEFLQANSLIIDLGQKLNVETLRLQLENAGYSCVDNVYEHGEFALRGAIFDIFPM
GEDKPFRIELFDDEVETLRTFDPDTQRTADKIDQIRVLPANEYPLHKEGQRNFRQNWYEF
FETDPKLSSLYTDVSQGIAPAGIEYYLPLFFGELSNLFDFLPKSTLIIHDSEVEAAAKQF
RDDVQLRYEDRRHDIRRPLVAPKHLFLNPEELFSAFNQFPRVQWYGEEAPDRAGSEQFNT
FDIGDISINAQAEEPLTLLKAFLDHTLISDSTRILFCTESAGRREAVRELLQRIHIRPAE
TASWSDFITAKDTIGITIAPLDKGLVISNDNGIAELIVISENQLFGQRIMQRRRRSKSKG
QAENIIRDLTELKEGSPVVHLDHGIGRYLGLKTLEIDNQVNEFLMLAYAGESKLYVPVSS
LHLISRYGGDSEGGPALNKLGTEKWAVAKRKAQEKIRDTAAELLDIYARREARVGFKFEK
PDQDYERFAAAFPFEETPDQQTAIEAVISDMTSRKPMDRLVCGDVGFGKTEVAMRAAFMA
VQSGKQVAILVPTTLLAQQHYENFKDRFADWPVQIEVLSRFKSAKETQVALDKMREGKAD
IVIGTHKLLQKDIVFHELGLLMIDEEHRFGVQQKERIKALRSEVDILTLTATPIPRTLNM
AMASVRDLSIIATPPAKRLSVKTFVRQYDKPTVKEALLREILRGGQVYYLHNEVKSIEKA
AREISELIPEARVSIAHGQMTERELESVMKDFYHKRSNVLVCTTIIETGIDIPSANTIII
DRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDGKKLSKDAGKRLDAIQSSQDLGAGFML
ASHDLEIRGAGELLGEEQSGHIQGIGFSLYMEMLEQAVKSIQSGKNPNAEIPLHQGAEVN
LHVPSLIPDDYLPDVNSRLTLYKRISNAQNDNDLRELQVEMIDRFGLLPEQVKNLFKVTS
LKLQLTPLGIQKLDAGPESGRIEFGRETNIDPFRLIQIVQTRPATYKLEGGQALKFIENM
PEIDQRLAVIERLLLDLQKDPNA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagccatctattgccagccctcttttccctgccatccctaccaaagcaggtgat
cgtcgattttggggggcgttaaataacagtaaccaagcactcgccattgctagcgcggcg
caacagtaccttggcttaaccttagtcattaccaaagatactcttacggcccagcgcctt
gaagaagagattgccttctttgctgaagatctgccagtactgcatttgcccgactgggaa
atcttaccgtacgatacgttctcgcctcaccaagacattatttctcagcgactttatacc
ttttcacagctaccgctgattgagcatggcttactcatcgttcctatcagcaccttgctg
cataaaactgcgccgaaagagtttttacaagccaacagtttaatcatcgatttggggcag
aaactgaatgttgaaaccctgcgcttacagttagaaaatgccggttacagctgcgttgat
aatgtctatgaacacggcgaatttgctttgcgtggggcgatttttgatattttcccaatg
ggtgaagacaagccgtttcgtattgagttatttgatgacgaagtagaaaccctaagaacc
ttcgatcctgatacccagcgcaccgcggataaaatcgatcagatacgcgttttacctgcc
aatgaataccctctgcacaaagaaggccagcgcaattttcgtcaaaattggtatgagttt
tttgagacagaccctaaattgtcgtctttatataccgatgttagccaaggcattgcgcct
gcggggattgagtactatttgccacttttctttggtgagctgagtaacctattcgacttt
ttacctaagtccacattaattattcatgatagcgaagtcgaagccgctgccaagcagttt
cgtgatgatgtgcagttgcgctacgaagaccgacgtcacgacattcgccgccctctggtt
gcgcctaaacatttatttttaaaccccgaggaactgttctctgcgtttaatcaattccca
cgcgtacagtggtatggcgaagaagcccctgatcgcgcaggcagcgagcaatttaatacc
ttcgacattggcgatatcagcatcaacgctcaagccgaagagccattaacgctgcttaaa
gcttttctagatcacactctcatatcagatagcactcgcattttattctgcaccgaatcc
gcaggtcgtcgagaagccgtgcgcgaattgctacaacgcattcatattcgcccagccgaa
acagcctcttggtcagacttcatcaccgctaaagataccatcggtatcacgatcgcaccg
ctggataaagggcttgtgatcagcaacgacaatggtatcgctgaactgattgttatcagc
gagaaccagctatttggccaacgcattatgcagcgccgtcgtcgtagcaagagcaaaggc
caagccgaaaacattattcgtgatctcaccgaattaaaagaaggcagccccgttgttcac
ctagatcatggtattggccgttatttaggcctgaagacgctcgagatcgataaccaagtt
aacgaattccttatgctggcctatgccggtgaatccaagctttatgtgccagtatcgtcg
ctacatcttatatctcgttatggcggtgatagtgaaggcggcccagcactcaacaaactc
ggcacagaaaaatgggcggttgctaagcgtaaagctcaagaaaaaattcgcgataccgcc
gctgaacttctggatatttatgcccgccgtgaagctcgtgttggttttaagtttgaaaag
cccgatcaagattacgagcgctttgcagcggcgttcccgttcgaagaaacacctgatcag
caaactgcaattgaagccgtgatcagtgatatgaccagccgtaagccaatggatcgcttg
gtgtgtggtgacgtaggttttggtaaaacagaagtggcgatgcgcgccgcgtttatggcg
gtgcaaagtggcaagcaagtcgcgattttggttcctactaccttgcttgctcaacaacat
tatgaaaactttaaagatcgctttgcggattggcccgttcaaattgaagtactatcacgc
tttaagtcggccaaagaaacccaagttgcgttagataaaatgcgcgaaggtaaagccgac
attgttattggtactcataagctgctgcagaaagacatcgtctttcatgagttgggatta
ttaatgatcgatgaagaacaccgttttggtgttcagcaaaaagaacgtattaaagcctta
agatcggaagtggatattttaacgctgaccgcaacgcccattcctcgaacgctcaatatg
gccatggccagcgtgcgtgacctttcgattatcgccaccccaccagcaaagcgcttatcg
gtcaaaacctttgtgcgccaatacgataaaccaaccgtaaaagaagcactgctgcgagaa
attcttcgtggcgggcaagtttattacctgcacaacgaagtaaaaagcattgaaaaagcg
gcccgtgaaatcagcgaattgattcctgaagcacgagtatccatcgcccacggtcaaatg
accgagcgcgaacttgaatccgtcatgaaagatttttatcacaaacgctctaatgtgttg
gtctgtaccaccattattgaaaccggtatcgacataccttcagccaataccattattatc
gatcgcgctgacaaatttgggcttgcacaactacatcaattacgaggccgagtgggccgt
tcgcatcaccaagcctatgcttacttgttaacgccagatggtaaaaaactgagtaaagat
gctggcaaacgtctcgatgctattcaaagttcacaagatcttggagcaggctttatgttg
gcctcacacgatttagaaattcgtggcgcaggtgaactattaggtgaagagcaaagcgga
catattcaaggtattggctttagcttgtatatggaaatgctagaacaggccgtgaagtca
attcaatccggtaaaaatcctaacgcagaaattccactacaccaaggcgctgaagttaat
ctgcatgtaccatcattgattcctgatgattacctgcccgacgttaatagccgccttacc
ttgtacaagcgcatttccaatgcacagaacgataatgacttgcgagagctgcaagttgaa
atgatcgaccgctttggtctattacccgaacaagtgaagaacttgtttaaagtaacgtca
cttaaactacagctcacacctcttggtattcaaaaactagacgcagggccagagtctggg
cgcattgaatttggccgcgaaaccaacattgatccgttccgactcattcaaattgttcaa
acccgccccgcaacttataaacttgaaggtggacaagcccttaagtttattgagaacatg
cccgaaattgatcaaagactcgcagtcatcgaacgcttattactcgacctgcaaaaggac
cccaacgcataa
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