Oleispira antarctica: OLEAN_C27610
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Entry
OLEAN_C27610 CDS
T04028
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-A factor
KO
K03086
RNA polymerase primary sigma factor
Organism
oai
Oleispira antarctica
Pathway
oai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OLEAN_C27610 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oai03021
]
OLEAN_C27610 (rpoD)
Transcription machinery [BR:
oai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OLEAN_C27610 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
DUF1057
KNOX2
Motif
Other DBs
NCBI-ProteinID:
CCK76937
UniProt:
R4YPE8
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All DBs
Position
3106323..3107441
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AA seq
372 aa
AA seq
DB search
MNSNEVNQLIQHYPDIQILSPEKELSIATKMDNAMEQLAQVVLVQEHLLEQVCDILVAQY
QSSPDLDDFLTQYDLLLLARHSEALTKDINVSESSLSVSLIHLPCDRSNVFDFLLAQVNQ
IEVPLCDYAQKLKKQYELSRNQLVQGNIRLVMHIAKRFANKGVDTEELIQEGSIGLIKAA
EKYNLHKGFRFTTYAYWWIQQAIKNALNQKRSAIRIPINTSDRIFKIELAKQQYYNRYEE
LPTLKQLQKLTGLKQEQILSVSNVGNLTVSMNAPVYEDGLMLEEILVSEENTATYSNENM
LNINDKDYLRSMIKQLPKRQQTIVYLYHGIGINDSLSFGEIAPQIGVTLERTRQLYHKSI
AFLRELSHVKTA
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaactctaatgaagtaaatcagttaattcagcactaccctgacatacaaatactcagc
cctgaaaaagaactaagcattgcaacgaaaatggataatgcgatggagcagcttgcgcaa
gttgtattagtgcaagaacatcttctagaacaggtatgcgacatactcgttgcacaatac
caaagttctccagacctagacgattttttaacccagtacgatctgttattactcgcgcga
cacagtgaagcattaacgaaagatataaatgtgtctgaaagcagtttatcggttagctta
attcacttaccctgcgatcgatcgaatgtattcgattttcttcttgctcaggttaatcaa
atagaagttcccttatgcgattatgcccagaaattaaaaaaacaatacgagctcagccgc
aaccaattagtacaaggcaatatacgattggttatgcacattgccaaacgctttgccaat
aagggcgttgatacagaagaattgattcaagaaggatctatcggactgatcaaagcagca
gaaaagtacaatttacataaaggctttcgctttacgacctatgcttactggtggattcag
caagccattaaaaatgcattgaatcaaaagcgcagcgccatccgcatcccgattaatacc
agcgatcgcatattcaaaatagaattagcgaagcaacagtattataaccgctatgaggaa
ttaccaacgttaaagcaactgcaaaaattaaccggactaaaacaggagcaaattttatcc
gttagcaatgttggcaacttaactgtatcgatgaatgcacctgtgtacgaagacggtttg
atgctcgaggaaatattagtttcagaagaaaatacagcaacctactctaatgaaaacatg
ctaaacattaatgacaaagattacttacgaagcatgattaaacagctgcctaaacgccaa
caaactattgtctatctgtatcatggcatcggtattaacgacagtttaagttttggagaa
atagccccgcaaataggcgtcacgttggagcgaactcgccagctgtaccataaatcaatc
gccttcctaagagagctatcacatgtaaaaacggcctaa
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