Oleispira antarctica: OLEAN_C36150
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Entry
OLEAN_C36150 CDS
T04028
Symbol
rnr
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
oai
Oleispira antarctica
Pathway
oai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLEAN_C36150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oai03019
]
OLEAN_C36150 (rnr)
03016 Transfer RNA biogenesis [BR:
oai03016
]
OLEAN_C36150 (rnr)
Enzymes [BR:
oai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OLEAN_C36150 (rnr)
Messenger RNA biogenesis [BR:
oai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OLEAN_C36150 (rnr)
Transfer RNA biogenesis [BR:
oai03016
]
Prokaryotic type
tRNA degradation factors
OLEAN_C36150 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
CCK77791
UniProt:
R4YRE4
LinkDB
All DBs
Position
4066051..4068765
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AA seq
904 aa
AA seq
DB search
MSKPRNNKPQDPHAAREAKNYDNPVPSREFILQTLIDLATPSTYEEVCAALHVDDEDRTE
GVRRRLIAMARDAQIDSNRGRQTYFPLDPKKIAIGLLQGHKDGYGFLIREEGDDVYISNN
QMRKAFHGDKAMVRITGTDRRGRLEGQIAKVVEHNTTHIVGRYFEEAGGGIVRPDSKRVS
HEVVIAAKDRNGAKHDQFVNVEIIQQPRAGEMITGRVVEVLGNNLAPGMEIEVAIRSHDI
PNTWTKELLEELKSIPEEVIEKDKKKRIDLRDLPFVTIDGEDARDFDDAVYVEKNKRTNG
WRLFVAIADVSHYVPVGSELDKEATKRATSVYFPENVVPMLPEVISNGLCSLNPEVDRLV
MVCEVTISEKGKMSGYKFFEAVIHSHARLTYNLVWEMLQKPMTDDGKKWRKHYRPVVPHL
ETMYSLYKILRKGRTKRGAIDFETQETRIEFDSERKISQIVPTTRNDAHMIIEECMLMAN
VCAADFLSRYNVPALFRVHNGPSDQKLDNLREFLGEMGLSMAGGDPSPSHYQALLKQIAD
RPDAKLIQTVMLRSLSQAVYQPENEGHFGLAFDAYAHFTSPIRRYPDLLVHRAIRSVIRS
TRECKHVRRVEGAGRLAKKAIFPYDVPAMVALGENCSMAERRADDATRDVVDFLKCEYME
QHVGEVFDGTISAVTGFGMFVSLDDVFVEGLVHISNLANDFYQFDQVKHRLVGERTRRTF
RLGDKVSIQVMSVSLDDRKIDFALAGEAAPTDNTGQRKNKKPATGKKEHKRPVSRRPLNF
ENVADNTVDSDSKTEGGEKSGEQKKRRGPRRNGRKKSTNTGSANKSEASNSADKQATTGG
SNSTSSKTDKPAKKKKRPMSKRQKMNGAEAKSKSQSADAKTRKPKKPGSAKKKAKKSNAK
AHIA
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaacctcggaataataaacctcaagatccacacgccgcacgcgaagctaagaat
tatgacaatccggtgccaagccgtgagttcattcttcaaaccttaattgatttagcaact
ccttcgacctacgaagaagtctgcgctgcgctgcatgttgatgacgaggatcgtaccgaa
ggagtacgccgtcggttaattgctatggctcgtgatgcccagatagacagcaatcgcggt
cgccaaacttacttcccgcttgatccgaaaaaaatcgccattggtcttttacaaggccac
aaagatggttacggatttttgattcgtgaagaaggtgacgatgtttacatctcgaacaat
caaatgcgtaaagctttccatggtgacaaagccatggttcgtattaccggcaccgatcgt
cgcggtcgcttagaaggtcagatcgctaaggttgttgagcataatacaacgcacattgtg
ggtcgctattttgaagaagccggtggcggtattgttcgtcccgatagtaagcgtgttagt
catgaagttgtaatcgctgctaaagatcgcaatggcgcgaaacacgatcagttcgttaat
gttgaaatcatccaacagcctcgcgctggtgaaatgatcaccggccgagttgttgaagtg
ctgggtaataacttagcacccggtatggagatcgaagtggctattcgtagccacgatatt
ccaaatacttggacaaaagaattactggaagagctaaaatctattccagaagaagtcatc
gagaaagataagaagaagcgtattgatttgcgcgacctgccgtttgtcaccattgatggt
gaagacgctcgtgattttgatgatgccgtttatgttgaaaaaaataagcgcaccaatggc
tggcgtttatttgttgccattgccgacgtatctcattacgtccctgtgggtagcgaactg
gacaaggaagcgacaaagcgcgcaacctcggtttactttccagaaaacgtagtgccgatg
ctgcctgaagttatttccaatggcttgtgctcactgaatcctgaagtcgaccgtctagtc
atggtctgcgaagtaaccatcagtgaaaaaggcaagatgtcaggctacaagtttttcgaa
gccgtgatccacagccacgcacgcctaacctacaatctagtgtgggaaatgctgcaaaag
ccgatgacggacgatggtaaaaaatggcgtaagcattaccgccctgtcgtgcctcactta
gaaacaatgtatagcctgtacaaaatattgcgtaaaggccgtactaaacgtggtgccatc
gatttcgaaacccaagaaacaagaatagaattcgatagcgaacgtaagattagccaaatt
gttccaacgacgcgtaacgatgctcacatgatcatcgaagagtgtatgttgatggcgaac
gtgtgtgccgctgatttcttgagccgctacaacgtgcctgcgttattccgtgtgcataat
ggcccaagcgatcagaaactcgataacctaagagaattcttaggggaaatgggattgagc
atggccggtggtgatccatcgccaagccactaccaagcgctgctaaaacaaattgccgat
cgtcctgatgctaaattaattcagacggttatgctgcgctcgttaagccaagcggtttat
cagccagaaaacgaaggccactttggtttagcgtttgatgcttacgcacacttcacttca
ccgattcgtcgttatcctgatttattagtgcatcgcgctattcgctcagtgattcgtagt
acgcgtgaatgtaaacacgttcgccgagttgaaggggcgggtcgtttagcgaagaaagct
atcttcccttacgacgttccagctatggttgctttgggcgaaaattgctcgatggcagaa
cgccgcgctgacgacgctactcgcgatgtcgtcgactttttgaagtgtgaatacatggag
cagcatgttggcgaagtttttgacggtacaatttccgcggttactggttttggtatgttc
gtctcgctagatgatgtgtttgtggaaggattggttcacatatccaacttggctaatgac
ttctaccagttcgaccaagtgaagcatcgcctagtcggtgagcgcactcgtcgcacattc
cgcttgggtgacaaagtatcaattcaagtgatgagcgtatcccttgatgatcgcaagatt
gactttgcactcgcgggtgaggcagcaccaaccgataatacgggtcagcgcaaaaataaa
aagcctgctacaggcaagaaagaacataaacgccctgtatcacgccgccctcttaacttt
gaaaacgtcgcggataataccgtagattctgattcaaagactgaaggcggagaaaagagt
ggcgagcagaaaaaacgccgcggtcctcgtcgaaatggtcgtaagaaatcaacgaataca
ggcagcgctaacaagtccgaagccagtaactctgcagataagcaagccactacaggcggc
agtaactctacttctagcaagacggacaaaccggcgaaaaagaaaaaacgcccaatgtct
aaacgccaaaagatgaacggtgctgaagctaaatcaaagagccaaagtgccgacgccaaa
acgcgtaagcccaagaaaccaggctcagcgaagaagaaagcaaagaaatcaaatgccaaa
gcgcatatcgcttag
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