Oxalobacter aliiformigenes: NB647_00025
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Entry
NB647_00025 CDS
T08749
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NB647_00025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oal03021
]
NB647_00025 (rpoC)
03400 DNA repair and recombination proteins [BR:
oal03400
]
NB647_00025 (rpoC)
Enzymes [BR:
oal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NB647_00025 (rpoC)
Transcription machinery [BR:
oal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NB647_00025 (rpoC)
DNA repair and recombination proteins [BR:
oal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NB647_00025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
WAV89261
LinkDB
All DBs
Position
complement(4730..8953)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKALLDLFKQVQQDEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPAAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDEFSASM
GAEGIRELLRSIDIDREAEMLRNELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVITVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKRLVELQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEA
RTLMLASNNILFPSNGEPSIVPSQDMVLGLYYATREKINGKGEGMLFADISEVQRAYDNK
EVELATRITVRLPDYVKDPISGETVKKTVRYETTVGRALLSEILPEGLPFSVLNTPLKKK
EISRLINTSFRKCGLRATVVFADHLMQAGFRLATKAGISICINDMLVPKQKVELISAAEQ
EVKQIEQQYASGLVTSGERYNKVVDIWGKTGDSVGKAMMDQLKVEEVIKRDGSAGTQESF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTHEGVVMKALIEGGEVVEALGDRI
LGRVCANDIINPESREVLYEAGTLLDEDKIEEIERLGIDEVKVRTPLTCETRYGMCAKCY
GRDLGRGSLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEARSNGTIH
FTSAMRYVTNDKGDQIVISRSGEITIADDVGRERERHKVPYGATLLVNDGLPVKAGKVLA
TWDPMTRPIITEYAGTIRFENVEEGVTVARQVDEVTGLSTLVVIDPKRRGTSTKSARPQV
KLLNDNGEEVKIAGTEHAVTISFQVGALLMVQDGQKVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNRHEFLIGKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVNVVDAGDTCYIPGEQVERSELLDENDRVIAEGKKPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDSLRGLKENVIVGRLIPAGTGLAMHRARKQKAVWEQEE
RAALQRAEQMQHQQDVSSVVSENPEQE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaagatgaacaattcgatgccatc
aagattggtctggcatctcctgaaaaaatcagatcatggtcttacggtgaagtcaaaaaa
ccggaaacgatcaactatcgtaccttcaagccggaacgcgacggcctgttctgtgccaaa
attttcgggccgatcaaggattatgaatgcttgtgcggcaagtacaaaagactgaaacat
cgtggcgtaatttgcgaaaaatgcggtgtggaagtgactctcgccaaggtccgtcgtgaa
cggatggggcatattgagctcgcctcgcccgcagcacacatctggttcctgaaatccttg
ccatcccgtttgggtatggtgctggatatgacgttgcgcgatattgagcgggtactctat
tttgaggcctatgtcgttaccgatcctggtatgacgccgttgaagaaatgccagatcatg
tcagaggatgattatgccgcgaaatatgaagaatacggcgacgagttttctgcatcgatg
ggggccgaaggtatccgcgagttgttgcgttcgattgatatcgatcgcgaagccgaaatg
ctgcgtaatgaactgaaggattccaagtctgaagcaaaaatcaagaaatatgccaagaga
ctgaaagttctggaagctttccagcgttccggtatcaagccggaatggatgatcatggaa
gtccttcctgtattgccgcctgaattgcgtcctcttgttccactggatggaggccggttt
gcgacttctgatctgaatgatctgtatcgccgtgttatcaacagaaacaaccgtctcaaa
cggttgctggaattgcgtgctcctgaaatcattacccgtaatgaaaaacgtatgcttcag
gaagccgtggattccttgctggataacggccgtcgcggcaaggcgatgacgggggccaac
aagcgtcctttgaagtcgctggccgaaatgatcaagggcaaaggcggtcgtttccgccag
aatctgctgggcaaacgtgtcgattattccggtcggtcggttattacggttggtccgcag
ttgaaattgcaccagtgcggtttgccgaagctgatggcattggagctgtttaaacctttc
attttcaacaagctggaactgatggggttggctacaacgatcaaggcggccaaacgcctg
gttgaattgcaggaaccggtcgtgtgggatattctggaagaggttatccgtgaacaccct
gttatgctgaatcgggcgcctacgttgcacagactgggtatccaggcttttgagccagta
ttgattgaaggcaaggccattcagctgcatccgcttgtctgtgccgctttcaatgccgac
tttgacggtgaccagatggcggttcatgttccgctgtcggttgaggcacagctggaagca
cgtactttgatgctggcatccaacaatattcttttcccatccaatggtgaaccatcgatc
gttccttcgcaggatatggtgcttggcctttattatgcgacacgcgagaagatcaatggc
aagggcgaaggcatgctgtttgccgatatttcggaagtgcaacgcgcctatgacaacaag
gaagtcgaactggctacccgtattacggttcgtttgccggattacgtcaaggatccgatc
agtggcgaaacggtcaagaaaaccgtacgttatgaaacaacggtcggacgtgccttgttg
tcggaaattcttccggaaggcctgcctttctcggtattgaatacccctttgaagaaaaag
gaaatttcccgtctgatcaatacgtcgttcagaaagtgcggattgcgcgcgacggttgta
tttgctgatcacctgatgcaggcgggtttccgtctggcgaccaaggcgggtatttccatc
tgtatcaacgacatgttggtaccgaaacagaaagtggaactgatttctgctgcggaacag
gaagtcaagcagatcgaacagcaatacgcatccggtctggtgacttctggtgagcgctat
aacaaggtggtcgatatctggggcaagaccggcgacagtgtcggcaaggccatgatggac
cagttgaaggtggaagaagtcatcaagcgcgatggatcggccggaacgcaggaatcgttc
aattccatttatatgatggcagattcaggggctcgtggttcggctgcgcagatccgccag
ttggcaggcatgcgtggactgatggcaaaaccggacggctcgatcattgaaacaccgatt
acagccaacttccgggaagggctgaatgttctccaatactttatttccacgcatggtgcc
cgtaagggattggctgatacagcgctgaaaacggcgaattccggttacctgacccgtcgt
ctggttgatgtgacacaggatctggtcgttattgaagacgattgcggtacgcatgaaggc
gttgtcatgaaagccctgatagagggcggtgaagtcgttgaagcattgggcgatcgtatt
ctgggccgtgtttgtgccaatgacattatcaatcctgaatcgcgtgaagtattgtacgag
gcaggaacgctgctggacgaagacaaaatcgaggaaatcgaacggcttggtattgatgaa
gtcaaggttcgcacaccgctgacatgcgaaacacgttatggcatgtgtgcaaagtgctat
ggccgcgatttgggccgtggttctctggttaatgccggtgaagctgttggcgttatcgct
gcccagtccattggtgagcctggaacccagttgaccatgcgtactttccatattggtggt
gcggcatcccgttccgctgtcgcatcaagtgtcgaggcacggtctaacggtaccattcac
tttacttcggccatgcggtatgtcactaatgacaaaggtgaccaaattgtcatttcacgc
tcaggcgaaattacgattgcagatgatgtcggtcgtgaacgtgaacgtcataaagtgcct
tatggtgcaacgttgctggttaatgacgggctgcccgtcaaggcaggcaaggtattggca
acatgggatccgatgacccgtccgatcattacggaatatgccggtacgatccgttttgaa
aatgttgaagaaggagtaaccgtcgcaagacaggttgatgaagtgaccggtttgtcgact
cttgtggtgattgatccgaaacgtcggggaacttccacaaaatcggctcgtccgcaggtc
aaactgttgaatgacaatggggaagaggtcaagatcgcgggcacggaacacgctgtgacg
atcagcttccaggtcggtgctcttctgatggtccaggacggtcagaaagtatcggttggt
gaggtgcttgcccgtatcccgacggaatcgcagaagacacgtgatattacaggggggctt
ccgcgggtcgccgaattgtttgaagcacgttcgccgaaagatgcgggtatgctggcggaa
gtgaccggtacggtggctttcggcaaggaaaccaagggcaaacagcgtcttgaaattacc
gatatggacggtaatcggcacgaattcttgatcggcaaggacaaacaggttctggttcat
gacggccaggttgtcaacaaaggcgaaatgattgttgacggaccggctgatccgcaagat
attctgcgattgctgggaatcgaggctttggctcgttacattgttgacgaagtgcaggac
gtttatcgtctgcagggtgtgaagatcaatgacaaacatattgaagttatcgttcgtcag
atgctgcgccgtgtcaatgtcgttgatgccggtgacacctgttatattccaggtgaacag
gtggaacgttctgaattgctggatgaaaatgaccgtgtcattgcagaaggcaagaaaccg
gcaacatacgaaaatgtgttgttgggtatcaccaaggcatcgttgtcaacagattcgttc
atttctgccgcttccttccaggaaacgacgcgtgttctgaccgaggcagccattatgggc
aaaaaagacagcctcagaggtttgaaggagaatgtaattgtcggtcgtttgatacctgcg
ggtaccggactggcaatgcatcgtgcacgcaaacagaaggcagtctgggaacaggaagag
cgtgcagctttgcaacgcgcagaacaaatgcagcaccagcaggatgtttccagtgttgtc
agtgaaaatcctgaacaggaataa
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integrated database retrieval system
