Oxalobacter aliiformigenes: NB647_06305
Help
Entry
NB647_06305 CDS
T08749
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NB647_06305 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oal03400
]
NB647_06305 (recB)
Enzymes [BR:
oal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NB647_06305 (recB)
DNA repair and recombination proteins [BR:
oal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NB647_06305 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WAV88512
LinkDB
All DBs
Position
complement(1355729..1359460)
Genome browser
AA seq
1243 aa
AA seq
DB search
MKENEFDVLSCPLDGWTLVEASAGTGKTWNIGGLYLRFLLEKRLEVKDILVVTFTRAATD
ELRDRIRNRIAAALAYLEGRGISTGDEFASALLERLFAEGRTREDMAGILRLAFCSFDQA
AIFTIHSFCQRALALSAFSSGQAFAVKAETDDSELVQEAVNDFWRRHVAGGRFSPAFSGW
LEQKRFTPDRLATQLRQHLKKPLATVKWPDTADTAQAETVQETIGRLETVFAEASACWTA
EKETVMTLLKEKCADGTLNKTSYRIPYIDSAAAAFDRLFATGDALAMIGEKDKTGHMTAS
KLAKSTRKNREMPQHPFFRLAEMLAETCREVETELEAARYGLLKRFLAEAGDSLKEKKRE
RRTIAFDDMLCNLYEALHDPDMPWLAEAVRKHFPAALIDEFQDTDPLQYAIFSAIYGESD
KPVFLVGDPKQAIYSFRNADLHTYLAARKRLDARFTLMENHRSVPGLIDACNTLFSVNER
AFMQDGLDFVPVRSGNRALPHLRDESGNAGKETESMRIWMLPETENGPPARSDALRQSVE
AVADEIARLIQAGRNGTCTLDGRPVGAGDMAVLVRSHNEAALIREALVNRGIGSVSFSQD
SVFHSREAQELECVLHAMMTPEDEPLLMAAVSTEMMGLDSAAVEALADDEAGLSGLLERF
GQYRRAWLGHGAGYALRWLFDREKVVARLLALPDGERRVTNLRHLAELVSREDESKSAPD
SLMRWYTLQRENDHRAEEAELRLETDRNLVQVMTMHRSKGLEFPFVFCPLLWDNQPKNAG
RGGDGIEYHDGDETVIDYRPLSETDGQIVKKRMNTEQAAEMMRLIYVALTRAIHRCYLVA
GCYTFRNNATQSRKSLLNWLVAGNGFSPEDWLSGNNGKKAETVLLPETGEIGDAWKALEA
RSPHIRVIGLPSPVYRTVGENDKETEILSARTFAKTLDIRWRMNSFSGLIRNAVDETETG
DHDERIATGETPVSGGELPAFLKEDDILLFPKGTYAGSCLHAVFEHADFTDRTTWEAAAR
TALSRYPQEVDGQFPFRPETAGDACQSMALDMLENVMATPLPGGIMLNTVENGHKLVEWP
FCLSSAPLSAGKMNQLAKRFGYAVPQLVFDDMTAYLNGFVDLVFEADGRFWLLDWKSNHL
GYRQEDYCTARIDQAMTEHGYHWQYLLYTVALHRYLASRMPKYDYDRHFGGVFYLFVRGV
RPAWRQADGSPSGVFFHKPGRHVIEAADRLFGQQVRAQKEKKA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaatgaattcgacgtactctcctgtcctctggacggctggacactggtcgag
gcatcggccggaacgggcaagacgtggaatatcggcggtctttatctgcggtttttgctg
gaaaaacggctggaagtgaaagatattctggtcgtgaccttcacacgggcggcgacagat
gaattgcgcgatcgcatcaggaaccggattgccgccgcactggcatatctggaaggacgc
gggatttcaaccggcgatgaattcgccagtgccttgctggagcggctctttgccgaaggc
cgtactcgtgaagacatggccggcattctgcggctggctttctgttcgttcgatcaggcg
gctattttcaccattcacagtttctgccagcgggcattggccctctcggctttttcctcg
ggacaggcattcgccgtaaaggcggaaacggacgattcggaactggtacaggaagcggtc
aacgatttctggcgccggcatgttgccggcggccggttctcccccgcgttttcgggctgg
ctggaacagaaacggttcactccggacagactggccacacagttgcggcaacatctgaaa
aagccgctggccaccgtgaaatggcccgatacggccgataccgcacaggcagaaacggta
caggagaccatcggcaggctggaaaccgtttttgcagaagcgtcggcgtgctggacggcg
gaaaaagaaacggtaatgaccctgctgaaagagaaatgcgccgacggtacgttgaacaaa
acaagttaccggataccgtatatcgatagtgccgccgccgctttcgacagactttttgcc
acgggcgatgcgctggcaatgatcggcgagaaggacaagaccggtcatatgaccgcctcg
aaactggccaaaagcacgagaaaaaaccgggaaatgccgcaacatccgtttttccgtctg
gcggagatgctcgccgaaacctgccgggaggtggaaacggaactggaagccgcccgttat
ggcctgctgaaacgttttctggcggaagccggggattcgctgaaggaaaaaaagcgcgaa
cggcgcaccatcgctttcgacgacatgctgtgcaatctttacgaggcgttgcacgatccg
gacatgccctggctggcagaagcggtcagaaaacacttccctgccgcgctgatcgacgaa
ttccaggataccgatccgctccagtacgcgattttttccgctatttacggggaatcggat
aagccggtttttctcgtcggcgatccgaaacaggctatttacagtttccgcaatgccgat
cttcatacgtatctggctgcccggaaacggcttgacgcccgttttacgctgatggaaaac
caccgttcggttcccgggctgatcgatgcctgcaataccctgttttccgtcaatgaacgg
gccttcatgcaggatggtctggatttcgtgccggtacggtcgggaaaccgtgccttgccg
catttgcgcgatgaatccggtaacgccggaaaggaaacggagagcatgcgtatctggatg
ctgccggagacggaaaacggaccgcccgcacggtccgatgcactcaggcagtctgtcgag
gcggtagccgatgaaatcgcccgcctgatacaggccggccgaaacggaacctgcacgctt
gacgggcggcctgtcggcgcgggtgatatggccgttctggtccggagccacaatgaagcg
gcgctaatacgcgaggcattggtgaaccgtggcatcggcagtgtatcgttttcgcaggac
agcgttttccattcccgggaggcgcaggaactggaatgcgtgctgcatgccatgatgacg
ccggaagacgaaccgcttctgatggcggcggtttcgacggaaatgatggggctggactcg
gctgccgtcgaagcgctcgccgatgatgaagcgggcctgtccggacttctcgaacgtttc
ggacaatatcggcgggcatggctgggtcacggggccggttatgcgttgcgctggcttttc
gaccgggaaaaagtggtagcccggttgctggccttgcctgacggggaacggcgcgtgacc
aatttgcggcatctggccgaactcgtcagccgggaggatgaatcgaaaagcgcaccggat
tcgctgatgcgctggtacaccttgcaacgcgaaaacgaccaccgtgcggaagaagcggaa
ttgcggctcgaaaccgaccggaatctggttcaggtgatgaccatgcaccgttccaaagga
ctggaattcccctttgttttctgtcccctgctctgggacaaccagccgaaaaacgcggga
agaggcggagacggaatcgagtatcacgacggagatgaaacggtgatcgattaccggccg
ctatccgaaacggacgggcagatcgtcaaaaaacggatgaacaccgaacaggcagctgaa
atgatgcgcctgatttacgtggcgctgacacgggcgatccatcgctgttatctggtggca
ggctgctatacgttccgcaataatgccacacagtcgcgcaaaagccttctgaactggctg
gtggccggaaacggcttttctccggaagactggctctcgggcaataacggaaaaaaggcg
gagacggttttactgcccgaaacgggggaaatcggcgatgcctggaaagcgctcgaagcc
cgctctccgcacatccgggtgatcgggctgccctcccctgtgtaccggacggtcggcgaa
aacgacaaagaaacggaaatcctgtcggccagaacatttgcgaaaacgctggacatccgc
tggcggatgaacagtttcagcggtctgatacgcaatgccgtggatgaaacggaaacaggc
gaccatgacgagcggatagccaccggagaaacgccggtatccggcggggaactccccgct
ttcctgaaagaggatgacattctgctgtttccgaaaggcacttatgccggaagctgtctg
catgccgtgttcgaacatgccgattttaccgacaggacgacatgggaagcggctgcccga
accgccctgtcgcgatatccgcaggaagtggacgggcagtttccgttccgtccggaaacc
gccggggatgcctgccagtcgatggcgcttgacatgctggaaaatgtcatggcgacacct
ctgcccggagggatcatgttgaatacggtggaaaacgggcacaagctggtggaatggcct
ttctgcctttcgtcggcacccctgtcggccggaaaaatgaaccagctggcgaaacggttc
ggctatgccgtacctcaactggtttttgacgacatgacggcatatctgaacggtttcgtc
gatctggttttcgaggcggacggccggttctggctgctggactggaagtcgaatcatctc
ggataccggcaggaagattactgtaccgccagaattgaccaggccatgacggaacacggt
taccactggcaatatttgctttatacggtcgcgttgcaccgttatctggcgtcgagaatg
ccaaaatacgactacgaccggcatttcggcggcgtgttttatctgtttgtccggggagta
cgccccgcgtggcggcaagcggacggctctccttccggcgtgtttttccacaagcccgga
cggcatgtgatcgaggcggcagaccggctgttcggacagcaggtacgagcgcagaaggag
aaaaaggcatga
DBGET
integrated database retrieval system
