Oxalobacter aliiformigenes: NB647_06900
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Entry
NB647_06900 CDS
T08749
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NB647_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oal03019
]
NB647_06900
03009 Ribosome biogenesis [BR:
oal03009
]
NB647_06900
Enzymes [BR:
oal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NB647_06900
Messenger RNA biogenesis [BR:
oal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NB647_06900
Ribosome biogenesis [BR:
oal03009
]
Prokaryotic type
rRNA processing factors
NB647_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WAV88625
LinkDB
All DBs
Position
complement(1497631..1500612)
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AA seq
993 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIESNARELHKSNIYKAVITRIEPSLEACFVNY
GEDRHGFLPFKEVARSLFREGVDVRNATIRDALTEGQEIMVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDVPPGMSIIARTAGIGRTVEELQ
WDLNYLLQLWNAIESAGSSAPGAFLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
QFMSYVMPDMANRVKRYRDGVPLFSRFQIEHQIESAYSRVVSLPSGGSIVIDHTEALVAI
DVNSARSTRGTDIETTAFTTNCEAAEEVARQLRLRDLGGLIVIDFIDMESPKNRREIEAR
LKEALHYDRARVQMDKITRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIEEESMKESSAVIHVQIPVDVAAFLLNEKRGEIMKIESRHKVKIVLIPNKYLETPH
YKLERIKHDDPRLEEPEVSYKLAEQSDVDMSFSKRQKEPVKPAQEAIVKNIPEGMPAPVV
DHSPVPAVAEKGFFDRLLGFFGIGKTEAPAEPAGKQPSRNGRKGRNGERSRSRSRRGEAR
EEKSRTAQPAVASSSEHEDAAATTVPKTGRQRRTRGEKGEQRQREERKQARSEENAVKPE
VLETVVAKPEVTALVPVSEAIQIVAAETDVVTEMPVQERTGDVGNEDETRRRRRRGGRNR
SRRDANAETPSEQTEMPNADIENIVAVPVPEVPVVDMSSVEVTEVAGENGSSDGADTVQV
NPEEETASPRRESRRSHPKRRRASTENAAVAAETDETAVYAEKADDIVADVQVVPVVSEV
EVVPAKTAEIVEAVVTEVQPVVVEAEPPVEEVKQEDVAAVAEPVAEPVTEPVAGSVETDS
AGVLVDPEGEAEAGKDVVASSVSVPAADPVSELERILAEAGLTMASTDPEKMKKVQESRI
QSETETVRRPVRRRRAPVVVDDGPLIQVDTRKE
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaacgcaacgcagcaggaggagctgcgcgttgcgattgtcgac
gggcagaaactgatcgatatcgatatcgaatcgaatgcccgtgagttgcacaaatccaat
atctacaaggcagtcattacccggatcgaaccttcccttgaggcctgtttcgtcaactat
ggcgaagaccgtcacggttttctgccattcaaggaagtggcccgttccctgttcagggaa
ggagtggatgtccgcaatgccactatcagggacgccctgacggaaggtcaggaaatcatg
gttcaggtcgaaaaggaagaacgcggcaacaagggggcggctctgaccacgttcatttca
ctggccggccgctatctggtgctcatgccgaacaatccgcgtggtggtggtgtttcacgg
cgtgtcgaaggcgaggagcgtcaggaactgcgtgaaacgatggacaagctggatgtgccg
ccgggcatgtcgattattgcccgtacagccgggatcggccgtacggtcgaggaattgcag
tgggacctgaattatctgttgcaactctggaatgccatcgagagtgccggttcttccgct
ccgggcgcttttctgatctatcacgaatcgtctctggtcatacgtgccattcgcgattat
ttccagccggatatcggcgaaatcctgatcgatacggatgaaatctacgaacaggcccgc
cagttcatgagttatgtcatgccggatatggccaaccgggtgaaacggtatcgggatggt
gtcccgcttttttcacgtttccagatcgaacaccagatcgaatcggcttactcgcgtgtc
gtttccctgccttcggggggatccattgtcatcgaccataccgaggcactggtcgccatc
gacgtcaactcggcccgttccactcgcggaacggatatcgaaacaaccgcgttcacgacc
aattgcgaggcggccgaagaagtcgcccgccagctgcgtctgcgcgatctcggcggactg
atcgtgatcgatttcatcgatatggaatcgccgaaaaaccggcgtgagatcgaggcccgt
ctgaaggaagcgctgcattatgacagggcacgcgtccagatggacaagatcacccgtttc
ggtctgatggaattgtcgcgccagcggctgcgcccttccctgtccgaaggaagccatatc
acctgcccgcgctgtaacggaaccggacatattcgcgatacggaatcgtccgcccttcag
gttctccggattatcgaggaagaatccatgaaggaaagttcggcggtcattcatgtccag
attccggtcgatgtcgcggcgtttttgctcaatgaaaaacgtggcgagatcatgaaaatc
gaatcgcgccacaaggtcaagatcgttctgataccgaacaagtatctggaaacgccacac
tacaaactggaacgtatcaagcatgacgatccgcgtctggaagaaccggaagtcagttac
aaactggcggaacagtccgatgtggacatgagtttctccaaacgccagaaagaaccggtc
aagccggcacaggaagcgatcgtcaagaatattccggaaggtatgccggctccggtggtc
gatcattcaccggttccggccgttgccgagaaaggatttttcgaccgtctgctgggcttt
ttcggtatcggcaaaactgaagcaccggcagaacctgccgggaaacagccgtccagaaac
ggacggaagggccgaaacggcgagcgttcacgcagccgcagccgccggggtgaagcacgt
gaggaaaagagccggacagcacagccggcagtggcttcctcgtccgagcatgaggatgcc
gctgcaacaacggtaccgaaaaccggccgccagcgcaggacccgtggcgaaaaaggtgaa
caacgccagcgggaagaacgcaaacaggccagaagtgaggaaaatgccgtaaagccggaa
gttttggaaaccgttgtcgcgaaaccggaagtgactgcactggttccggtatccgaagcc
atccagatcgttgccgctgaaacggatgtcgtcacggaaatgccggtacaggaacgtaca
ggtgatgtcggtaatgaagacgaaacccggcgtcgccgccgtcgcgggggacgcaatcgc
agccgtcgggatgccaatgccgaaacaccgtccgaacagactgaaatgccgaatgcggat
atcgaaaacattgtcgccgttcctgttccggaagtgccggtggttgatatgtcctctgtg
gaagttacggaagttgctggagaaaacggatcctctgatggtgccgataccgttcaggtg
aatccggaagaggaaaccgcttctccgcgtcgtgaaagccggcgttcccatccgaaacgc
cgtcgcgcttcgacggaaaatgctgccgtagcggccgaaacggatgagactgctgtttat
gccgaaaaggcagatgacatcgtcgcagacgttcaggttgttccggtcgtttctgaagtt
gaagtcgtgccggccaaaacggctgaaattgtggaagccgtcgtcacggaagtacagccc
gttgttgtggaagcggagccacctgtcgaagaagtgaaacaggaagatgtcgcagcggta
gcagagccggttgccgaaccggtaacggaacctgtcgccggatcggttgaaacggattcg
gcgggagttcttgtcgacccggaaggtgaggctgaagccggaaaggatgtcgtggcttct
tctgtatccgttcccgcagccgatccggtatccgaactggaacggattctggcggaagcc
ggtctgacgatggcttctaccgatcctgagaaaatgaagaaggttcaggaaagccggatt
cagtcagaaacggaaacggtcagacggccggttcgcagaagaagagctcccgttgttgtc
gatgacggcccattgattcaggtggatacccgaaaggaataa
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