Oxalobacter aliiformigenes: NB647_08880
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Entry
NB647_08880 CDS
T08749
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03030
DNA replication
oal03430
Mismatch repair
oal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NB647_08880 (dnaE)
03430 Mismatch repair
NB647_08880 (dnaE)
03440 Homologous recombination
NB647_08880 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oal03032
]
NB647_08880 (dnaE)
03400 DNA repair and recombination proteins [BR:
oal03400
]
NB647_08880 (dnaE)
Enzymes [BR:
oal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NB647_08880 (dnaE)
DNA replication proteins [BR:
oal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NB647_08880 (dnaE)
DNA repair and recombination proteins [BR:
oal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NB647_08880 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WAV88978
LinkDB
All DBs
Position
complement(1940504..1943965)
Genome browser
AA seq
1153 aa
AA seq
DB search
MKNTQFVHLRLHSEYSIVDGLVRVDDAVAAAAGDEQPAMALTDLSNLFGLIKFYKAARKK
GVKPIAGCDVWITNDVDREKPSRLLLLVKDRAGYLNLCELLTKAWLENQYRGRAEVRAEW
LEELAARHPDTGMIALSGAKQGDIGMALESANIESAEKLALKWARIFRGNFYIEIQRTGQ
LGMEQYVRHAVGLADKLQLPVVATHPVQFLTRDQFRAHEARTCISEGEVLSNKKRAHLFN
EQQCFLTQKEMVQLFADLPGALQNSVEIARRCNLVLELGHHKLPLFPTPDGMTLDEFLAS
EAKHGLEKRLEVLFPDEEERKARRPVYDERLNYEIDTIIKMGFSGYFLIVADFIRWAKNN
GVPVGPGRGSGAGSLVAYCLLITNLDPIAYNLIFERFLNPERVSMPDFDVDFCQHGRDKV
IQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLIPFKPGKQVTIA
EAKKEEPILAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPGKLTDFCPLYTQD
GESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAMKYIHQLDPAMSGFELDTIPLDDK
ETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKH
GEAFEYPDERTKGILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLRRAMGKKDAAEMAR
HRQIFRDGAAKNNLSEAKADEIFDLMEKFAGYGFNKSHATAYALLSYQTAYLKKHHAAAF
MAANMSLAMDDTDKIKVLVEDAVDVCGLEILPPDINHSDYYFKPVGEPPSVSKKPVTQIR
YGLGAVKGSGESAIEAIVQARKERPFKDLFDFCVRVDKHQINRRTIESLIRAGAFDCFGV
DRAVLLASVELAIEAAEQAEASANQVSLFGDEETVLNAVEYVRVPHWTEKYKLTEEKGVL
GFCLSGHLFHAYAKEARQFARTRISELDVSREPRWVVGIVAGIRTQMSQRGKMMVVSLDD
GTASVEVTVFSELLEQKRAIFKEDEFLAVFGKVSEDRFSGGLRLNADDALDIAEARLHFG
QHIAFSLPEKFSPSVLKGMLVSCTGENGMRLIADYVAGENRCQYDFGTGWLVLPKDECIN
ELAQRFENVHVVY
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacgcaattcgttcatctgcgccttcattccgaatactccatcgtggatgga
ctggttcgtgtcgatgatgctgtcgccgcggcagccggggatgaacagcccgctatggcg
ctgacggatctttccaatctgttcggcctgatcaaattctacaaggccgcacgcaagaaa
ggagtcaaaccgattgccggatgcgatgtctggatcaccaacgatgttgacagggaaaag
ccgtccaggcttttgttgctggtaaaagacagggcaggttacctgaacttgtgtgaattg
ctgaccaaggcatggcttgaaaaccagtatcgggggcgtgccgaggtgagagcggaatgg
ctggaagaactggccgcccgtcatcccgatacagggatgatcgccttgtcaggtgccaag
cagggggatatcggcatggcgctggaatccgccaatatcgaaagtgcggaaaagcttgcc
ctgaaatgggcacggatttttcgtgggaatttctatatcgaaatacagcggactggccag
ctgggaatggaacagtatgtccggcatgccgtcgggttggcggacaaactccagcttccg
gtcgtcgcgacacatcctgtccagtttctgacacgtgaccagttccgggcccatgaggcg
agaacctgtatttccgaaggagaagtcctttccaacaagaaacgtgcccatttgttcaat
gagcagcaatgttttctgactcaaaaggaaatggtgcagttgtttgccgatctgccgggt
gccttgcagaattccgtcgagatcgcacgtcgctgtaatctggttctggaactgggacat
cataaattgcccttgtttcccacgccggatggcatgacactggatgagtttttggcgagt
gaggcaaaacatggccttgaaaaacggctggaagttctgtttccggatgaagaagaaaga
aaagccagacgtcccgtttatgatgaacgtctgaattacgaaatcgataccatcatcaag
atgggtttttccggttacttcctgatcgtggcggatttcatccgttgggccaaaaacaat
ggagtgcctgtcggcccgggcagggggtcgggtgccggttctctggtcgcctattgtctt
ctgattaccaaccttgatccgattgcctacaatctgatttttgaacgtttcctgaatccg
gaacgggtctcgatgccggacttcgatgtcgatttctgccagcacgggcgcgacaaggtc
atccagtatgtgaaagaccgttacggaaaagacgcggtttcccagatcgccacattcgga
acgatggccgccaaggcggctgtgcgcgatgtcgggcgtgtactggatctgggatacaat
ttctgcgacggtatttccaaactcatccccttcaagcccggcaaacaggtgacgatcgcg
gaagccaaaaaagaagaacccatactggcggagcgtgagcagtcggaagaagaagtcaag
cagcttcttggtctggcggagcaggttgaaggtatcacacgcaatgtcggaatgcatgcg
ggcggtgtcctgatcgctcccggaaaattgaccgatttttgcccgctttatacccaggac
ggggaatccggcgtggtttcgcagttcgacaagaaagatgttgaagaaattggccttgtc
aaattcgactttctggggctgacgacactgacgattctggatctggcgatgaagtacatt
catcagcttgatccggccatgtccggtttcgagcttgatacgatacctctggatgacaag
gaaacgttcgacttgctgaccagagcgaaaacggttgccgtgttccagcttgaaagccgg
ggtatgcaggggatgctgaaagatgccagacccgaccgtttcgaagacattattgcgctt
gtcgcgctttaccgtccgggaccgatggatctgattccggatttttgccgtcgcaaacat
ggcgaggcattcgagtatccggatgagcggacgaagggcattctgtcagagacttacggc
attatgatttatcaggaacaggtcatgcagatggctcaggtgatcggtggatacacactg
ggaggtgccgacctgttgcgccgtgccatgggtaagaaagatgcggcagaaatggcaagg
catcgccagattttccgtgacggtgcggccaaaaacaacttgtccgaagccaaggccgac
gagattttcgatttgatggaaaaattcgccggatacggtttcaacaaatcgcatgctacg
gcatatgcgctcctgtcctatcagacagcctatctgaaaaaacaccatgcagccgcattc
atggcagccaacatgtcgctggccatggatgatacggacaagatcaaggtgctggtggaa
gatgcggtggatgtctgtggactggaaattctgcctccggatatcaatcattccgactat
tatttcaaaccggttggcgagccgcccagcgtcagcaagaaaccggtaacgcagatccgt
tacggtctcggtgcggtcaaaggctcgggagaaagtgccattgaggcgattgtccaggca
aggaaggaacgccctttcaaggacctgttcgatttttgtgtcagagtcgacaagcatcag
attaaccggcgtaccatcgaatccctcatcagagccggagcgtttgactgtttcggtgtg
gatcgtgccgttcttctggcctcggtcgagctggctatcgaggcagcggaacaggccgaa
gcatctgccaatcaggtcagtctgttcggggacgaagagacggttttgaatgcggtggaa
tatgtcagggttccgcactggacagaaaaatacaaattgacggaagagaaaggtgtgctg
ggtttttgtctttctggacatctgtttcacgcctatgcgaaggaagcgcgccagtttgcc
cggacccgtatttccgaactcgacgtatcgcgggaacccagatgggttgtcggcatcgtc
gccggtatccggacgcaaatgtcccagcggggcaagatgatggtggtgtctcttgatgat
ggcacagcgtctgttgaagtgactgtattttcggaattgcttgaacagaaacgtgccatc
ttcaaggaagatgaatttctggccgtgttcggcaaggtttctgaggaccgtttttccggg
ggattgcggctcaacgcggacgatgctttggacattgcggaagcaagactccatttcggg
caacatatcgctttttcgcttcccgagaaattcagcccttcggttctgaagggaatgctg
gtttcttgcacgggagaaaatggcatgcgtctgatcgcggattatgtcgccggggaaaac
agatgccagtacgatttcgggaccggctggctggttcttccaaaggatgagtgtatcaat
gaactggcacaacgatttgaaaatgttcatgtcgtttattga
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