Oxalobacter aliiformigenes: NB647_08885
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Entry
NB647_08885 CDS
T08749
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NB647_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oal03019
]
NB647_08885
Enzymes [BR:
oal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NB647_08885
Messenger RNA biogenesis [BR:
oal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NB647_08885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAV88979
LinkDB
All DBs
Position
complement(1944007..1945419)
Genome browser
AA seq
470 aa
AA seq
DB search
MAENQQKALAGTSPEKFGDFGLASELLKALDDLGYSSPTPIQSRAIPVILEGKDVMGAAQ
TGTGKTAGYSLPVLQSLLYHANTSMSPARHPVRALVLVPTRELADQVYEDIRKYAKYTRL
RAAVVFGGVDISTQTGILRAGTEILIATPGRLLDHIQQKNVNLGQTHILVLDEADRMLDM
GFLPDLQRIVNLLPKERQTLLFSATFSSEIRKLAKSFLENPVSVEVARKNATADNVKQAV
YHVDEADKNEAVEYLLRQHQQKQVLIFSNTKAGASRLARQLEKKGLKASAIHGDKTQAER
MAVLDAFKEGNISVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGATGE
AISLCSAKDEKLLNEIEKLIKRKLPLLTIPVFELKKEKIDKAETAGSGKRSERSPYKSVG
LEKKSQDPWFDRPYVPEEPSGEEKRPEEQVSRLPKKPLAALLGGKPKARK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatcagcaaaaggcattggcaggcacttcacctgaaaagttcggggatttc
ggattggcttccgaacttctgaaggcgcttgacgatctggggtatagctcgccaacaccc
atccagtcccgggccataccggtcattctcgagggaaaggatgtcatgggcgcagcccag
accggaaccggaaaaacggccggttattccttgcctgtcttgcagtcgttgctttaccat
gccaatacgagcatgtctcccgcacgtcatccggtgagggcactggtacttgtgccgact
cgtgaactggccgatcaggtttatgaagatatcaggaaatatgcgaaatatacgcgtttg
cgtgcggcggttgttttcggcggtgtcgatatttcgacgcaaaccggtattctccgggca
ggaacggaaatcctgatcgcaacgcccggcagattgcttgatcatatccagcagaaaaat
gtcaatctgggacaaacgcatattcttgtcctggatgaagcggatcgtatgctggatatg
ggttttcttcccgatttgcagcgaatcgtcaatttgttgccaaaagagcggcagacgctt
cttttttcagctactttttccagcgagatccggaaactggcaaaaagtttccttgaaaat
cccgtttctgtcgaagtcgcgcggaaaaatgccacggcagacaatgtcaagcaggccgtt
taccacgtcgatgaagccgataaaaacgaagcagtcgagtatttgttgcgccagcatcag
caaaagcaggtactgattttttccaataccaaagccggtgcttcacgtctggcacgtcag
cttgagaagaaaggactcaaagcgtccgccattcatggagacaagacacaggcggaaaga
atggcggtactggacgccttcaaggaagggaatatttccgttctggtcgcgacggatgtg
gcggcaagaggtttgcatattgaggaattgccgtgtgtgatcaatttcgatttgcctttt
gtggctgaagattatgtccatcgcataggcaggacaggcagggcgggagcgaccggtgaa
gcgatttccctgtgttcggcaaaagatgagaaactgctgaatgaaatcgagaagctgatc
aaaagaaaattgcctcttctcacgattcccgttttcgaactgaaaaaagagaaaattgac
aaggcggaaacagccggcagtggcaagcgttcggaacgcagtccttacaaatcggtcggg
ctggagaaaaaaagccaggatccctggtttgatcgcccttatgttcctgaagaaccctca
ggtgaggagaagcggcctgaagaacaggtttcccgattgccgaagaagccgttggcggca
cttctcggaggcaagccgaaagctcgaaaatga
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