Oxalobacter aliiformigenes: NB647_09520
Help
Entry
NB647_09520 CDS
T08749
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
oal
Oxalobacter aliiformigenes
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oal03019
]
NB647_09520 (hrpA)
Enzymes [BR:
oal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NB647_09520 (hrpA)
Messenger RNA biogenesis [BR:
oal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NB647_09520 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
AAA_23
SRP54
ResIII
AAA_30
PhoH
ABC_tran
TsaE
Rootletin
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WAV89093
LinkDB
All DBs
Position
2095170..2099069
Genome browser
AA seq
1299 aa
AA seq
DB search
MSASESLSKKPRSFRQPKPAAGEILRTPVPSIVYPEELPVSARREEIAKAIRDHQVIVVC
GETGSGKTTQLPKICLELGRGQTGLIGHTQPRRIAASTTANRIARELNSPIGEIVGYKIR
FTDKLSAKASVKLMTDGILLAETQSDRLLKQYDTIIIDEAHERSLNIDFLLGYLKQLLPK
RPDLKLIITSATIDAERFARHFSTDKESVPIIEVSGRLYPVEIRYRPVLDNTTQEDKDRS
DTRQTRDLMEAIVDSVDELFRTGSGDTLVFLPGEREIRETAEALRKHHPPHVQILPLYAR
LSAQEQEKIFKPANARRIILATNVAETSLTVPGIRFVIDTGLARVKRYSYRNKVEQLHIE
PVSQAAANQRAGRCGRVASGICIRLYDEQDYSLRQPYTTPEILRSSLASVILRMKSLKLG
NIDTFPFMEPPLKRAIADGYQLLQELGALDEFNQMTPVGRELAMLPLDPRIGRMILAARD
HQCLKEILIIASALSIQDPRDRPIDAQEAADNAHRKFANNQSEFMTYLKIWNWFDEALEH
KKSNRLLRESCRDQFLSFLRLREWRDIHSQLLTIVRERGWRLNELDATYEQLHLALLTGL
LGNVGCKTEDTTVFLGARGIRFQIWPGSSLARKNGRWIMASELVDTTRLYARCIAQIQPE
WLERVGHHLLKKSWSDPHWEKRPAQVSAFERATLYGLAVYNQRRIHYGQINPAEARQIFI
REALVNGDYETKAPFFAHNQRLIREIENLEHKSRRTDVLIDEELIAAFYDQHLPPSVING
FSFEKWHKEATKENPKLLFLNRDGLMRHEAAGITTELFPKTLNLAGIEMTLGYHFEPGSV
RDGVTLTIPIYALNQLDEVRCEWLVPGMLKEKTQLLLKSLPQKIRRNCVPLPDYAAKFVD
RIRNKNSFGSGSLIDAIIADIREQTHVMVKKEDFRQETLPLHLFMNFRVVDEHNRMLEMS
RNLASLKSDFGKQAREAFRQLAELRSSGKKEKTSPSAKHRSGHPVQDNNDMSFSSEKIMT
WNFEPLPELLEITKGKQSLIGYPALADKTTHCEIEVFDEPAMAKRIHHAGLRRLFSLQLK
DQLKFLGKNINGLTQMGMQFIKLGSQEELRDQILQASLEAAFMYQPLPEKQSDFEKRKNE
GKTRIGLICNEIAKTVSQILAEYQAIQRKLSAIKPHDYALADINQQLSQLIDKQFITENS
LERLKHFPRYLKACNIRIEKCRNDPQRDKTLFASWQQVASPYHRYLKEKRLKKLEQNPKT
IEYRWLLEELRVSLFAQELRTPFSVSVKRLQKIWETMQR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttccgaatctttatccaaaaaaccacgttccttcagacaaccgaaaccggct
gccggtgaaattctgcgaacgcccgttccttctattgtctatcctgaagagctgccggtt
tcggctcgacgcgaggaaatcgccaaggccatccgggatcatcaggtcattgtcgtttgc
ggtgaaaccggctctggcaaaacgacccagttgcccaaaatctgtcttgaacttggcagg
ggacaaaccggtttgatcggacacacgcaaccacgccggatcgccgccagtacgacggca
aatcgcattgcacgggagcttaattcaccgatcggtgaaattgtcggttacaaaatccgc
ttcacggacaaactgagtgccaaggcatcggtcaaactgatgacggatggcattcttctg
gccgaaacgcaaagcgaccgtcttctgaaacaatacgatacgatcatcattgatgaagct
catgaacgcagcctgaatatcgactttcttctggggtatctcaaacagcttctgccgaaa
agaccggatctgaaacttattatcacttccgcgacaatagatgcggaacgtttcgcccgc
catttcagtacagataaagaatccgttcccattattgaagtatccggcaggctgtatccc
gtcgagatccgttaccgccccgttcttgacaacacgacacaggaggataaagacagatcc
gatacccgccaaacccgtgatctgatggaggctattgtcgattctgtcgatgaactgttc
agaacaggttcaggagataccctcgttttcctgccgggggaaagggaaatccgggaaacg
gcagaagccttgagaaaacatcacccgccccacgtccagattctgcctctttatgccagg
ctttctgcacaggaacaggaaaagattttcaagcctgccaatgcaagaagaatcattctg
gcgaccaatgtggcagaaacatccctgaccgttccgggcatccggtttgtcatcgatacg
ggacttgcccgtgtaaagcgctacagttaccggaacaaagtcgaacaactgcatatcgaa
cctgtctcgcaggcagccgccaatcagcgtgcagggcgttgtggacgtgttgcatccggt
atctgtatccggttgtatgacgaacaggattattctctcaggcaaccctataccacccct
gaaattcttcggtcttcgctggcatctgttattttaaggatgaaatccctgaaactggga
aatatcgatacctttcccttcatggaaccacccctgaaaagggccattgccgatggatat
cagcttttgcaggaattgggggcacttgacgagttcaaccagatgactccggtcggacgg
gaactggccatgcttccgctggatccccgtatcggccgcatgatactggcggcccgcgat
catcaatgtctcaaagaaatactgattatcgcatcggccctgtccattcaggacccgcgc
gacaggcccatcgatgcgcaggaagctgccgataacgcccatcggaaattcgcgaataac
cagtccgaattcatgacttatctgaaaatatggaactggttcgatgaagcgcttgaacac
aaaaagtcaaacagactgctgcgtgaaagctgccgtgaccagtttctttcattcctgaga
ttgcgcgaatggcgggacatccactcccagcttttgactattgtccgcgaaagaggatgg
cgcctcaatgaactggatgcgacttatgaacagttgcatctggcattactgacagggctt
ctgggaaatgtcggttgcaaaaccgaagacacgacggtatttctgggagcccgcggaatc
cgtttccagatatggccgggatcctcgctcgcacgtaaaaacggccggtggatcatggca
tcggaactggtcgatacaacccggctgtatgcccgttgtattgcgcaaatccagcccgaa
tggctggagagggtaggacaccacctgctgaaaaaaagctggagtgatcctcactgggaa
aaacgtcctgcacaggtctcggcctttgaacgggcaacgctctacggtctggcagtctat
aaccagcgtcgcattcattacggacaaatcaatccggcggaagcacgccagatatttatc
cgtgaagcactggtcaacggtgattacgaaacaaaagcgccttttttcgctcacaatcag
cgattgattcgcgaaatcgaaaatctggaacacaagtcaagaagaaccgatgtattgatt
gacgaagaactgatcgccgcattttacgaccagcatttgccaccatctgtcatcaatgga
ttttccttcgagaaatggcacaaggaagcgacaaaagaaaatccgaaactgcttttcctg
aatcgtgacggcctgatgcgtcatgaagcggcgggtatcacgacggaactgtttccgaaa
acactgaatctggccgggattgaaatgacactgggttatcactttgagcccggcagtgta
cgggacggtgtcacactgacaataccgatctacgcattaaaccagcttgatgaggtacgt
tgcgaatggctggtccccggcatgctgaaagaaaaaacccagctgttgctcaaatccctt
ccccagaaaatccggagaaactgtgttccgcttccggattacgctgcaaaattcgttgac
cggatccgtaacaaaaactcgttcggctcgggatcgctaatcgatgccattatcgccgat
atccgcgagcaaacccatgtcatggtcaaaaaagaggatttcagacaggaaacgctgccg
ttacatctgttcatgaactttcgggtagttgatgaacataaccggatgctcgaaatgtcc
cgcaatctggcatccctgaaatctgatttcggcaaacaggccagagaggctttccggcaa
ctggccgaattacgttcctccggaaaaaaggaaaaaacgtcgccttctgcaaaacacaga
tccggccacccggttcaggacaataacgacatgtcgttttcttctgaaaaaatcatgaca
tggaattttgaaccattgcccgaactgcttgaaataaccaaaggaaaacagtccctgatc
ggttaccctgcgctggcagataaaaccactcattgtgaaattgaagtctttgatgaaccg
gcaatggcaaaacgcattcatcatgccggattacggagactgttttcgctacagttgaaa
gatcagctcaaattccttggcaaaaacatcaatggccttacccagatgggaatgcaattt
atcaaactgggatcacaggaagaattgcgcgaccagatattacaggcatcccttgaagcg
gccttcatgtatcagcccttgccagagaaacagtccgattttgaaaaaaggaaaaacgag
ggaaaaacacgtataggactgatatgcaatgaaatcgccaaaaccgtttcgcagatactt
gccgaatatcaggctatccagagaaaactttctgcaataaaaccccatgattatgcgctg
gccgatatcaaccagcaattgtcacaattgatcgacaagcaattcatcacggaaaactcc
ctcgaaagactcaaacactttccacgctacctgaaagcttgcaacattcgtatcgaaaaa
tgccgcaacgatccccaaagagacaaaacactttttgccagctggcaacaggtcgcttct
ccataccacaggtatctgaaagaaaaacggctgaaaaaacttgaacagaatccgaaaaca
atcgaatatcgctggcttctggaagaattgagagtctctcttttcgctcaggaattgcgt
acgccgttttcagtttccgtcaagcgacttcagaaaatctgggaaaccatgcagagatag
DBGET
integrated database retrieval system
