Brucella anthropi ATCC 49188: Oant_3640
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Entry
Oant_3640 CDS
T00568
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oan
Brucella anthropi ATCC 49188
Pathway
oan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Oant_3640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oan03400
]
Oant_3640
Enzymes [BR:
oan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Oant_3640
DNA repair and recombination proteins [BR:
oan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Oant_3640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
ABS16346
UniProt:
A6X542
LinkDB
All DBs
Position
2:complement(1017012..1020524)
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AA seq
1170 aa
AA seq
DB search
MPVFSKLGLKSSSALGANRHIVIDGVADGYEAFCLIRLAEEIGERGPIMYIVRDGQRIAD
LEQVLSFVAPDMPVLHLPAWDCLPYDRVSPGADASARRLAALSALSELKKTPHPAIILTT
ANAVLQKLPPQAAIAEQVISARPGNQLDMNDLASRLERNGFERVSTVRDIGEFAVRGGIL
DLYAPGAEEPLRLDFFGDTLESIRAFDPASQRTTGTRKEFVLQPMSEITLSPDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDKLDTVFDHAGNMPVVFDHLVHEA
LTERHTMVVDHYESRLRQAEGKEPGSDAVPYKPVKPEALYLTPSEVEKHAEAGGMRIDLT
PFGAPEVTGRIIVHADVHKGRSFAEERAATDVNLFEAVVKHIAELRASGKKVLVAAWTEG
SLDRLLQVLDEHGLEKIESVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVIVAEQDILG
DRLIRRSKRRKRDQDFISEVASLNAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSESSDAVLDKLGGGAWQMRKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFSARFPYDETDDQLTAIESVADDLAAGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAIVVPTTLLSRQHFKTFSKRFHGLPINLAHASRLVGTKELAAA
KKGLEEGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
CPRISDLGEIEEFLKTHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttcagcaaactaggtctcaagtcctccagcgcactcggggcaaatcgtcat
atcgtgatcgacggcgttgccgacggttacgaggcgttctgtctcattcgtctggcggaa
gagatcggcgaacgcggaccgattatgtatatcgtgcgcgacgggcaacgcattgccgat
ctggagcaggtcttgagtttcgtggcgccggatatgccggttctgcatctgcctgcttgg
gactgcttgccttatgaccgcgtatcgcccggcgcagacgcatctgcacgccgactggct
gcactcagcgcgctgtccgagcttaaaaagacgccgcatccggcgatcatcctcacgact
gccaatgctgttctgcaaaaactgccgccacaggcggctattgccgaacaggtgatttcg
gcgcgtcccggcaaccagctggatatgaacgatctggcatcccggctggaacgtaacggt
ttcgaacgtgtttccaccgtgcgcgacatcggcgaatttgcagttcgtggtggtattctc
gatctttatgcacccggcgcggaagagccgttgcggcttgatttctttggcgacacactg
gaatcgatccgcgctttcgatccggcttcgcagcgtaccacgggcacacgcaaggagttc
gtgctccagccgatgagcgaaatcacgctttcgccggacatgatcagccgtttccgcaag
aattacgtcgcgatgttcggtgcgccgcagcgcgatgacgcgctttatcaggcgatcagt
gaaggtcgtcgctttgcgggcatggaacattggctgccgcttttctacgacaagcttgat
accgtcttcgaccatgcgggcaatatgccggtggttttcgaccatctggtgcatgaggcg
ctgaccgagcgccatactatggtcgttgaccattacgagtcgcggctgagacaggcggaa
ggcaaggagccgggcagcgatgcagtaccctacaagccggtcaagccggaagcgctttat
ttaaccccgtcagaggtcgagaagcacgctgaggccggaggtatgcgcatcgacctgacg
ccattcggtgcgccggaggttacggggcggataattgttcatgcggatgtgcataagggc
cgcagctttgccgaggagcgcgccgccaccgacgtaaacctgttcgaagcggtggtgaaa
catattgccgaactgcgtgcgtcgggcaagaaagtattggttgccgcgtggacggaaggt
tctctcgaccgtcttttgcaggttcttgacgagcatgggctggaaaagatcgagtcggtt
gaccggctttctaccgtcaaggcgctgtcacgcgacaaggtgacggcggcggtgctggct
gtcgaaagcggcttcgatgctggcgatctcgtcatcgtggccgagcaggatattctgggc
gaccgtcttatccgccgttccaagcgccgcaaacgcgatcaggatttcatctcggaagtt
gcctcgctaaacgctggcgatatcgtcgtccatgtcgatcacggtatcggtcgcttcatt
ggcctcaagaccattaccgccgctggcgctccccacgactgtcttgaaattcactatgcg
ggcgatgaccggctgtttctgccggtcgaaaatatcgagcttctgtcgcgctacggttcg
gaaagctccgatgctgttctcgacaagcttggcggcggcgcatggcagatgcgcaaggcc
aagctcaagaaacgcctgcttgagattgccgggcatctgatccagatcgctgccgaacgg
cagatgcgcggtgcgccggtgatgacgccgccagatggtctctatgccgaattttctgct
cgcttcccctatgatgaaaccgacgaccagctgacggcaatcgagtccgtggcggacgat
ctggctgctggcaagccgatggatcgcctgatctgcggtgatgtcggcttcggcaagacg
gaagtagccctgcgcgctgccttcattgcggcaatgagtggcgttcaagtggcgatagtc
gtgccgacaacgctcctgtcgcgccagcatttcaagaccttctcgaagcgcttccatggt
ctgccgatcaatcttgcccatgcctcgcgtcttgtcggcacgaaagaacttgcggctgcc
aaaaagggactggaagaaggaacggtcgatattgtcgtcggcacgcatgcgctgctcggc
aactcgatcaaattcaagaatctcggtctgctcatcatcgatgaagagcagcatttcggc
gttaagcacaaggagcggctgaaggaactgaagtcggacgtgcatgtgctgacattgtcc
gccacgccgatcccgcgcactttgcagcttgcgctaaccggcgtgcgcgaactgtcgctc
atcaccacgccacccgtcgatcgtatggcggtgcgcaccttcgtctcaccgttcgatccg
ctcgtcattcgcgagacgcttttgcgcgaacgctatcgtggcggccagagtttctacgtc
tgcccgcgcatttccgatcttggcgagatagaggagttcctgaaaacgcacgtgcccgaa
ctgaaagtggccgtggcccatggtcagatggcgccgggcgtgctcgatgacatcatgaac
gccttctatgacggccagtatgatgtgcttctgtccacgaccattgtggaatccggtctc
gatattccgacggccaacacgatgatcgtgcaccgcgccgatatgttcggtctggcacag
ctctaccagctgcgcggtcgtgttggtcgctcgaagcagcgcgctttcgcgctgttcaca
cttccggcaggtaagatgctgacgcagatggcggaacgtcgcctaaaggttctacagtcg
ctcgacacgctgggcgcaggcttccagcttgccagccacgatatggatattcgcggggca
ggcaatctgctcggcgaggaacagtctggccatatcaaggaagtcggttttgagctttac
cagcagatgctggaagaagccgttgcgacgctcaagggttccggcgaagtggaagacagc
cagtggtcgccgcagatcgctattggcacggcggttatgatccccgaagcctatgtgccg
gacctgcaattgcgcctcggcctttatcgccgtctcgccgatctggaagagccgcaggat
atagatgctttcggcgcggaactcattgaccgttttggtccgatgccggatgaagtgcag
cacctgctcaagatcgtttacatcaaggcactctgccgccgtgcgaatgtcgagaagctc
gatgccggtccgaagggcgtggtcatccagttccgtcatgcgacgttcaacaacccggtc
gggctggtgaaaatgatcggtgaacagggctccatggccaagatcaggccggatcagagc
atcgtcttcatccgcgactggccgacaccggaaaagcgcctcaacggttctgccgtcatc
atgacgcaactggcgaagatcgcggcgggttaa
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