Olleya aquimaris: DZC78_03440
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Entry
DZC78_03440 CDS
T05582
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
oaq
Olleya aquimaris
Brite
KEGG Orthology (KO) [BR:
oaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oaq03009
]
DZC78_03440 (rlmD)
Enzymes [BR:
oaq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DZC78_03440 (rlmD)
Ribosome biogenesis [BR:
oaq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DZC78_03440 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
TRAM
Methyltransf_15
Methyltransf_11
FtsJ
NagA_C
PCMT
UPF0020
Methyltransf_12
Methyltransf_ANTKMT
N6_N4_Mtase
Methyltransf_37
CUB_M02D8_5_2nd
Methyltransf_2
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
AXO79478
LinkDB
All DBs
Position
753169..754581
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AA seq
470 aa
AA seq
DB search
MARKNRRKQIFTNVEVLDAAAKGKTIAKAPDGRVIFLPNAVPGDVVDVQTFKKRKAYFEG
KATVFHKLSDKRVTPECQHFGVCGGCKWQDMGYEHQLYYKQNEVTNNLTRIGHLDLPEVT
PILGSAEQYFYRNKMEFSFSDSRWLTLEEVQSDKDLGDRNALGFHIPGMWDKILDIKKCH
LQADPSNAIRNAVRDFSIENGLDFFNTRNQTGLLRTMMIRTSSTKDIMVVIQFFKEDKEK
RELLLNFVAEMFPEITSLQYIINQKANDTIYDQDVICYKGEDHIFEEMEGLKFKINAKSF
YQTNSDQAFELYKLTRQFADLKGDELVYDLYTGTGTIAQFVSKKAKKVVGVEAVPDAISA
AKENAERNNITNCEFFVGDMKNVFNQEFINTHGQPDVIITDPPRDGMHKDVVQQILNIAP
QKVVYVSCNSATQARDLALMKEYYNITKVQAVDMFPQTHHVENIVLLEKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaaaatagaagaaaacaaatatttacaaatgttgaagtattagatgctgct
gctaaaggaaaaactatagctaaagcacctgatggacgtgtaatatttttacccaacgct
gttcctggagatgtcgttgatgtgcaaacttttaaaaagcgtaaagcttattttgaaggt
aaagcaaccgtttttcataaattaagtgataaacgtgttactccagagtgtcagcatttt
ggtgtttgtggaggttgtaaatggcaagacatgggttatgaacaccaattgtattacaaa
caaaatgaagtcactaataacctgactagaattggacatttagacttgccagaagtgacg
cctattttaggatctgccgaacagtatttttatagaaataaaatggagttttcttttagt
gattctagatggttaactttagaagaggttcagtctgataaagatttaggagatcgtaat
gcgcttggttttcatattccaggaatgtgggacaaaattttagatattaaaaaatgtcat
ttacaagcagatccatctaatgcaatccgtaatgctgtaagagatttttcgattgaaaat
ggattagatttttttaatactagaaatcaaacaggattattacgtactatgatgatacgt
acctcttcaaccaaagatattatggttgttattcagttttttaaagaagataaagaaaaa
cgtgagttactattaaattttgtagccgaaatgtttccagaaattacgtctttacaatac
attattaaccaaaaggctaatgatactatttatgaccaagatgtgatttgttataaaggc
gaagatcatatttttgaagaaatggaaggtttaaagtttaagattaatgctaaatctttt
taccaaactaattctgatcaagcttttgaattatataaattaacacgtcaatttgctgat
ttaaaaggtgacgagcttgtttacgacttgtacacaggtactggtaccattgcgcaattt
gtatctaaaaaagctaaaaaagtagttggtgtagaggctgttcctgatgctattagtgct
gcaaaagaaaacgctgaacgcaataatattacaaattgcgagttttttgtaggagacatg
aaaaatgtttttaaccaagaatttataaatactcatggtcaaccagacgttattataaca
gatccaccaagagacggaatgcataaagacgttgtgcaacaaatactaaatattgcacca
caaaaagttgtttatgtaagttgtaatagtgcgacacaagctagagatttagcgttaatg
aaagaatactataatattactaaagtacaggctgtagatatgtttccgcagacacatcat
gtagaaaatattgtacttttagaaaagaaataa
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