Olleya aquimaris: DZC78_14175
Help
Entry
DZC78_14175 CDS
T05582
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
oaq
Olleya aquimaris
Pathway
oaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DZC78_14175 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oaq03021
]
DZC78_14175 (rpoB)
03400 DNA repair and recombination proteins [BR:
oaq03400
]
DZC78_14175 (rpoB)
Enzymes [BR:
oaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DZC78_14175 (rpoB)
Transcription machinery [BR:
oaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DZC78_14175 (rpoB)
DNA repair and recombination proteins [BR:
oaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DZC78_14175 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AXO81485
LinkDB
All DBs
Position
3104909..3108721
Genome browser
AA seq
1270 aa
AA seq
DB search
MLVTQAERLNFSSIINRTEYPDFMDIQIKSFQDFFQLETKSEERGDEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYAIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKIIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTELDKENIEEILEIDVKTILIHKETAQ
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNSMGFIETPYRKVTDGVVDIKSAPTYLSAEEEEEKLIAQATVKVDEDGKILHDKVIARM
EGDFPVMDPKDIHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQAP
IVGTGLERQVASDSRVLINAEGEGVVQYVDANEIVIKYERTDDEAKVSFDSDIKTYPLVK
FRKTNQGTSINLKPIVKKGDKVSKGQVLSEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFS
RAVKDKRKRAQDKEDINKLENLYYTKFDELQSVLVEKLFTIVNGKTSQGIYNDLGEEVLP
KGKKFTLKMLNAVDDYTHLTGGTWTTDDHTNKLVADLIHNYKIKENDLQGSLRREKFTIS
VGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQDLGRTYATPIFDGATIDQINELTDEAGIPRYGHTY
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASATLREILTVKSDDVVGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaacacaagctgaaagattaaatttctcgtctataataaatagaacagagtac
ccagatttcatggatattcagattaaatcctttcaggattttttccagttagaaacaaaa
tctgaagaaagaggtgatgaaggtttatataacaccttcatggaaaactttcctattaca
gacacacgtaatcaattcgttttagaatttttagattactttattgatccaccaagatac
gctattgaagaatgtattgaaagaggactaacctatagcgttccgctaaaagcaaggtta
aagttatattgtacagaccctgaacatgaggatttcgagaccattgtccaggatgtgtat
ttaggaactataccttatatgactccttcaggtactttttgtattaacggagcagaacgt
gtagtagtatctcaattacatagatctccaggtgtcttttttggacagtctttccatgca
aatggaaccaaattatattcagctagagttattccttttaaaggatcatggatagaattc
gctacagatattaaccaagtaatgtatgcttacattgatagaaagaaaaagttacctgta
actactctttttagagctattggttttgagcgagataaagacatattagaaatttttgat
cttgctgaagaagttaaagtttctaaatcaggtcttaaaaaaattattggtcgtaaactt
gctgcacgtgtacttaacacatggcatgaagatttcgttgatgaggatacaggtgaagtt
gtatctattgaacgtaacgaaattgttttagatcgtgatacagaattagataaagaaaat
attgaagaaattcttgaaattgatgtgaaaactatccttatccacaaggaaactgcacaa
caaggagattacgcaattatacataatacacttcaaaaagatccaacaaactctgaaaaa
gaagctgtagaacatatttaccgtcaactacgtaatgctgagccgccagatgaagaaact
gcacgtggtattattgacaaattattctttagtgaccaacgttactctcttggagaagta
ggtcgttatagaatgaacaaaaaattacaattagatatcggaatggataagcaagtgctt
actaaagaagatatcattactataataaaatacttaatcgagcttattaattctaaagca
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagtaggagaacagtta
tcatctcagtttggtgttggtcttgctcgtatggcacgtactattcgtgagcgtatgaat
gttcgtgataatgaggtttttacacctattgacttaattaatgctaagacgttgtcgtca
gtaattaattctttctttggtacaaaccagttgtctcagtttatggatcaaactaatcca
ttagccgagattacacacaaacgtcgtttatctgcattaggacctggaggtttatctaga
gaaagagcaggatttgaggttcgagatgttcactatactcactatggaaggctttgtcca
attgaaactcctgagggaccaaacattggattaatatcttcattatctgtatacgctaag
gtaaattcaatgggattcattgaaactccttatagaaaagttacagatggtgttgttgat
attaaaagtgctccaacatatttaagtgctgaagaagaagaagaaaaattaatcgctcaa
gcaactgtaaaagttgatgaagatggtaaaattttacatgataaggtaattgctagaatg
gaaggtgacttcccagtaatggatccaaaagacattcattatacagatgttgcaccaaat
caaatttcatctatatcagcgtcattaattcctttcttagaacatgatgatgccaaccgt
gcattgatgggatctaacatgatgcgtcaggcagtacctttattacgtcctcaagctcct
atcgttggaactggattagaaagacaagtagcatcagattctcgtgttttaattaatgca
gaaggagaaggtgtggtacaatacgttgatgcaaacgaaattgtaattaaatacgaaaga
actgatgacgaagctaaagtaagttttgatagtgatattaagacttatccattagttaaa
tttagaaaaacgaaccaaggtacttctataaaccttaaacctattgttaaaaaaggtgat
aaagtatctaaaggtcaagttctatctgaaggttatgccactcaaaaaggtgaattagct
ttaggtagaaacatgaaagtagccttcatgccttggaaagggtataactttgaggatgcg
attgtgatttctgaaaaagttgttcgtgaagatatttttacttctatacatattgacgaa
tattctcttgatgtaagagatacaaaattaggtaacgaagagttaactaatgatattcct
aacgtttctgaagaggctacaaaagaccttgatgaaaacggtatgatccgtattggagca
gaagttaaacctggtgatatattaattggtaaaattactcctaaaggagaatctgatcca
acaccagaagaaaaacttttacgtgccatttttggagataaagcaggagatgttaaagat
gcttcattaaaagcttctccatcattacatggtgttgttattaataaaaaattattttct
agagcagtaaaagataaaagaaagagggctcaggataaagaggatattaataagttagag
aatttatattatactaaatttgatgaattacagtctgtattagttgaaaaacttttcact
attgtaaacggtaaaacatctcaaggtatttataatgatttaggtgaagaagtattacca
aaaggtaaaaaattcactttaaaaatgttaaatgctgttgacgattatactcacttaaca
ggtggtacatggacaacagatgaccatactaacaaattagttgcagatttaattcacaac
tacaagattaaagaaaacgatttacaagggtctcttagacgtgagaagtttactatatca
gtaggagacgagttaccagcgggtatcattaaattagctaaagtttacatcgctaaaaaa
cgtaagttaaaagtaggtgataaaatggcaggacgacatggtaacaaaggtattgttgca
cgtattgtacgtcaagaagatatgcctttcttagaagatggaactccagttgatattgta
ttaaatccattaggtgtaccatctcgtatgaacatcggacagatttatgaaacagtttta
ggttgggctggacaagacttaggtcgtacttatgctactccaatatttgatggtgcaaca
attgatcaaatcaacgagttaactgatgaagctggtatccctagatatggtcatacatat
ttatatgatggtggaacaggagatcgttttgatcaacctgcaacagtaggagttatctac
atgcttaaattagggcacatggtagatgataagatgcacgctcgttcaataggaccatat
tcattaattactcaacaacctttaggtggtaaagcacaatttggaggtcaacgttttgga
gaaatggaagtttgggcactagaggcttatggagcatcagcaacgttaagagaaatctta
acagtaaaatctgatgacgtagttggtagagctaaaacttacgaagctattgttaaagga
gaaccaatgccagaacctggattaccagaatctttcaacgtattaatgcacgaattgaaa
ggattaggattagacattagattagaagaataa
DBGET
integrated database retrieval system
