KEGG   Olleya aquimaris: DZC78_14180
Entry
DZC78_14180       CDS       T05582                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
oaq  Olleya aquimaris
Pathway
oaq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:oaq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DZC78_14180 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oaq03021]
    DZC78_14180 (rpoC)
   03400 DNA repair and recombination proteins [BR:oaq03400]
    DZC78_14180 (rpoC)
Enzymes [BR:oaq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DZC78_14180 (rpoC)
Transcription machinery [BR:oaq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DZC78_14180 (rpoC)
DNA repair and recombination proteins [BR:oaq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DZC78_14180 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AXO81486
LinkDB
Position
3108791..3113092
AA seq 1433 aa
MAKKQDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNEEGEPLQKLDFLTEEEYLNILETLPQDNQY
LDDTDPSKFVAKMGAECLIDLLARIDLDALSYELRHKANTETSKQRKTEALKRLQVVEAL
RESNENRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQLLLLASHNILNPANGSPVTVPSQDMVLGLYYMTKHRYSTPEV
PVRGEGLTFYSAEEVTIAYNEKRVELNAGIKVRTKDFNEAGELVYQIIETTVGRVLFNEK
VPAAAGYINQVLTKKSLRDIIGNILKVTSVPETAAFLDEIKTLGYNFAFRGGLSFSLGDI
IIPPEKQSMIDAANTKVDGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSEDCGTLRGVEVRALKKND
EVVEKLEARIVGRISLNDVYDPLTEEVLAEAGQLIDEVVAARIENSPIEAVEVRSPLSCE
AKKGICVQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LVAKFDGVAEIEDLKTVKGLDNDGKEVDVVISRTSELKLVDKKTGITLSTNNIPYGSHVF
VKNGDKLKADDVVCSWDPYNGVIISEFAGKVRYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLIVEDGKGEAIRSYNLPVGAHIMIDDGDKVEVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSSQILV
QENDFIKAGMPLSDGSVTPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKSDFIEENDNIFGMKVVENAGDSSNLKEGQIISAFQL
RDENSILRREDKQLVEARDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHRIPAGTGMRAYENIIVGSKEEFDQMMKAKQEVNYN
NT seq 4302 nt   +upstreamnt  +downstreamnt
atggcaaaaaaacaagataagaatacagtacagaggtttaataaaatctctattggttta
gcatcaccagagtctattttagcagagtctagaggtgaagttttaaaaccagaaactatc
aattatcgtacacataaaccagaacgtgatggtttattctgtgagcgtatttttggtcct
gtaaaggattatgaatgtgcttgtggtaaatataagcgtattagatataaaggtatcgtt
tgcgaccgttgtggagttgaagtaacagaaaagaaagtacgtcgtgacagagttggacat
attaatttagttgtgccagtagcacacatttggtatttccgttctttacctaacaaaata
ggatacttattaggattaccatctaagaaattagatatgattatctactacgaacgttat
gtagtaatccaaccaggtaacgctaaaaatgaagaaggtgaacctttacaaaaattagac
tttttaactgaagaagaatacctaaatattttagaaacgcttcctcaagataatcaatat
ttagatgacactgacccaagcaagtttgttgctaaaatgggagctgagtgcttaattgat
ttattagcaagaattgaccttgatgcgttatcttacgagttacgtcacaaagctaatact
gaaacatctaaacaacgtaaaacggaagctttaaagcgtttacaagttgttgaagcttta
cgtgagtctaatgagaatagagagaatcgtccagaatggatgatcatgaaagtagtgcca
attattccgccagaattaagacctttagtgcctttagatggtggacgttttgcaacttca
gatttaaatgatttataccgtcgtgttattattcgtaataaccgtttaaagcgtttagta
gaaattaaagcaccagaagttatcttacgtaatgagaaacgtatgttacaagaatcagta
gattcattatttgataacacacgtaaatcttctgcagtaaaaacagattctaacaggcca
ttaaagtcattatcagattcgcttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaacttaaattg
tttgagtgtggtttaccaaaaaatatggctgcagagctttacaaaccttttgtaattaga
aaattaattgaaagaggtattgttaagacagtaaaatctgcaaagaaaattatagacaaa
agagaaccagttgtttgggatatattagagaatgttttaaaaggacacccagttctttta
aatcgtgctcctacgttacacagacttggtattcaagcgtttcaacctaagttaatagaa
ggaaaagcaatacaattacacccattagtatgtactgcatttaatgccgattttgatgga
gatcaaatggctgtccacttaccattaggacctgaagcgattttagaatgtcaattatta
ttattggcatctcacaatatattaaatccagcaaatggatctccagtaacggtaccttct
caggatatggtacttggtctttactacatgactaagcacagatattctactccagaagta
ccagttagaggagaaggattaactttttactcagctgaagaggtaacaattgcttacaat
gaaaaaagagtagaattaaatgctggtatcaaagtaagaacaaaagatttcaatgaagct
ggtgagttagtttaccagattattgaaactactgttggacgtgtattatttaacgaaaaa
gtaccagcagcagcaggttatattaaccaggtattaactaaaaaatctttaagagatatt
attggtaatatcttaaaagtaactagtgtacctgaaactgcagcattcttagatgaaatt
aaaactttaggatataactttgccttcagaggtggtttatcatttagtttaggagatatt
attatcccaccagaaaagcaatcaatgattgatgctgcaaatactaaagtagacggtatt
actggtaactataacatgggattaattaccaataacgaacgttataaccaagttattgat
atttggacttcaacaaatgcagaattgacagaactgtcaatgaaacgtattagagaagat
cagcaaggattcaattcggtatttatgatgcttgattctggagctcgtgggtctaaagaa
cagattcgtcagttaacaggtatgcgtggattaatggctaagcctaaaaaatctacagca
ggaggaggatctattattgaaaacccgattttatctaactttaaggaaggtctttcaatt
ttagaatactttatatcaactcacggagctcgtaaaggattagccgatacagcacttaaa
actgccgatgcaggttatttaacacgtcgtttagttgatgtttctcaagatgtaattgta
aacagtgaagactgtggtacattaagaggtgttgaagtaagagctttaaagaaaaatgat
gaagtagttgaaaaacttgaagcacgtattgttggtcgtatttcattaaacgatgtttac
gatcctttaactgaagaggttttagctgaagcaggtcaattaattgatgaagtagtagct
gcaagaattgaaaattcaccaattgaagctgtagaagtacgttcaccattatcatgtgaa
gctaaaaaaggaatttgtgttcaatgttacggtcgtaacctagctaccaataaaatggta
caacgtggtgaagctgtaggtgttgttgctgcacagtctattggagaaccaggtacacag
ttaacactacgtactttccacgtaggaggtattgcaggtaacatttcagaagaaaataaa
ttagtagctaagtttgatggagttgcagaaatcgaagatcttaaaactgtaaaaggttta
gataacgatggaaaagaagtagatgtagttatctctcgtacttcagaacttaagttagta
gataaaaagacaggtattactttaagtactaataatattccttatggttctcacgttttt
gttaaaaacggagataaactaaaagcagacgatgttgtttgttcttgggatccatataac
ggagttattatttcagaatttgctggaaaagttagatatgaaaatatcgaacaaggtata
acttatcaagttgaaattgatgagcaaacaggtttccaagaaaaagtaatttctgaatct
agaaataaaaagttaattccaacacttattgtagaagatggtaaaggtgaagcaattcgt
tcttacaacctaccagtaggtgcacatataatgattgatgatggagataaagttgaagtt
ggtaaaatcttagttaaaattccacgtaagtctgctaaagcaggagatattacaggaggt
ttaccacgtgtaacagaattatttgaagcacgtaacccttctaacccagcagttgttagt
gctattgatggtgttgtttcttttggaaaaataaaaagaggtaatcgtgagattattgta
gagtctaagttaggtgagatcaaaaaatatctagttaagttatctagtcaaatcttggtt
caagaaaatgactttatcaaagctggtatgccattatctgacggttctgtaacaccaaat
gatatcttaaatattaaaggaccatctgctgtacaacagtacttagttaacgaggtacaa
gaagtatatcgtttacaaggtgtgaaaattaatgataagcattttgaggttgttgtaaga
caaatgatgcgtaaagtaagaattattgattctggagatactattttccttgaagatcaa
ttagctcataaatctgatttcattgaagaaaatgacaatattttcggaatgaaagtggtt
gaaaacgctggagattcttcaaacttaaaagaaggtcagatcatatctgctttccaatta
agagatgaaaattcaatattacgtcgtgaagataaacaacttgtagaagcaagagacgca
cagccagcaacagctacgccaatcttacaaggtattacaagagcatcattacaaactaag
tcatttatatcggcagcatcattccaggaaactactaaagttcttaatgaagcagcggta
agtggtaaagtagatacacttgaaggacttaaagaaaacgttattgtaggtcatcgtata
ccagcaggtacaggtatgcgtgcgtatgaaaacataattgtgggttctaaagaagaattt
gaccaaatgatgaaagctaaacaagaagttaattataactaa

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