Octadecabacter arcticus: OA238_c12820
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Entry
OA238_c12820 CDS
T02539
Symbol
rne
Name
(GenBank) ribonulcease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oar
Octadecabacter arcticus
Pathway
oar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OA238_c12820 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oar03019
]
OA238_c12820 (rne)
03009 Ribosome biogenesis [BR:
oar03009
]
OA238_c12820 (rne)
Enzymes [BR:
oar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OA238_c12820 (rne)
Messenger RNA biogenesis [BR:
oar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OA238_c12820 (rne)
Ribosome biogenesis [BR:
oar03009
]
Prokaryotic type
rRNA processing factors
OA238_c12820 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGI71448
UniProt:
M9RI81
LinkDB
All DBs
Position
1335723..1338548
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AA seq
941 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFID
YGGNRHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEKPKRSRTRTRRKP
KAAEVDGQDAVATADPVETSEEETSGDIAGMETIDLSDDETGEGSSPMETVADTPVDTPE
QGSGDGDDVADNETDGDDSDGGTEATDKDETIESVADEDDHEDVRPVRKPRPKRYKIQEV
IKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLK
AIANEMAVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGN
LIKRSIRDLYSKEIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVINYKEQMPLFARHQIES
YLSGMFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQ
LRLRDLAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLR
PGMLESTTQPCSHCHGTGLLRSDANVALGILRQLEEEGVHGRSKEVLIKAPIVISNFLTN
QKREHIAQIEARYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVELVSVISSETAVMAE
VDDAPMEEAEIEVTASVEAKTEGHSVAPESQDGDAPTKKRRRRRRRRRGSGGGENAEANG
EHAAHNDGDAAVVVKSDTLADVTPSDQGETPVVDAVVDAVAVEDAPKPKRTRTRRKKADA
PVESAEVTEIVEAALVEAASAEAAAEDAPKPKRTRSRRKKADDVPSDDAPAAPVAEAAPV
GAPAAKPKRAPRSRKKPAAAVDDTAVAETPAEPIAAFPAETPEPVVADKPKRVRKTTSKP
KVEPEVAPAAEPVPAPAEAVVEDAPVADDAPKKRGWWSLGR
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgacgccacccacgcggaagaaacccgcgttgtggtggtt
gacggaaacaaggttgaggaattcgactttgaaacccaatcccgccgccagcttgctggc
aacatctacctcgcaaaagtaacaagggtcgaaccgtcgcttcaggcggcgttcattgac
tatggcggcaatcgccatggtttcttggcgttcaacgaaatccaccccgattactaccag
attccggtggccgaccgccttgcgctgattgccgaagaaaaggcttacgctgaaagccaa
aaggctgaggctgaggccgagaagccaaagcgcagccgcacacgtacccgtcgcaagccc
aaagcggctgaagtcgatgggcaggacgcggtcgcaactgctgatccggttgagacatcc
gaggaagaaacctccggcgatattgctggtatggaaacgattgatctgagcgatgacgaa
actggcgagggatcgtcgccgatggaaactgtcgctgacacgccggtcgacacccctgaa
cagggttcgggcgacggcgatgatgtggctgacaatgagacggatggggacgactctgac
ggcggtacggaagccactgacaaggacgaaaccatcgaaagtgttgcggatgaagatgac
catgaagatgtgcgtcctgttcgcaagccacgcccgaagcgctataagatacaggaagtt
attaaagttcgacaaattctgttgatccaagtggtcaaagaggaacgcggcaacaaaggt
gcggccctgacgacctacctgtcattggcgggtcgctactgcgtgctaatgccgaacacc
gcacgtggcggcggcatttcacgcaagatcaccgttgcggcagaccgcaaaaagctgaaa
gcgattgcaaatgaaatggccgtgcccgaaggcgctggcctgatcatccgcaccgctggc
agccagcgcaccaaaaccgagatcaagcgcgattatgaatacctgcaacgcctatgggaa
cagattcgcgaactgacgctgcggtcttccgcaccagcgcagatctacgaagaaggcaac
ctgatcaagcgttcgatccgcgatctgtattcgaaagagatcgacgaagtgattgtcgag
ggcgagggcggttaccgcacggccaaggatttcatgaaaatgatcatgccatcccacgct
aagaacgtgataaactacaaagaacagatgccgctttttgcgcgtcaccagatcgaaagc
tacctgtcgggcatgtttaacccaactgtgcaactgccatcgggcggctacatcgtgatc
gacacgaccgaagcgcttgttgcggttgacgtgaactccggtcgcgccaccaaagaaggt
tcgattgaacaaacggcaacaaagaccaaccttgaggccgcggcagaagtcgcgcgtcaa
ctgcgcctgcgtgaccttgccggtcttatcgtcatcgactttatcgatatggatgagcgt
aagaacaacgcttccgtagaaaagctgatgaaagacaagctcaagaccgaccgggcccgc
atccaagtgggccggatttccggcttcggcctgatggaaatgtcgcgtcagcgtttgcgt
ccgggcatgttggaatcaacgacccagccatgttcgcattgtcacggcacaggcttgctg
cgctctgacgctaacgtcgcattgggtattctgcgccagctggaagaagaaggtgtgcat
ggtcgttcaaaagaagtcttgatcaaggcgccgatcgtcatttccaacttcttgacgaac
cagaaacgtgaacacatcgctcagattgaagcccgctatggcctgtccgtgcgcatcgag
tgtgatccgcatcttgtatcgcctgatttcgtgcttgagaaattcaagaccgccagccgc
gttgtggctgaagttgaattggtgtcggtgatttcgtcagaaacggctgttatggctgaa
gtagacgatgccccgatggaagaggctgagattgaagtgaccgcatccgttgaggccaag
accgagggtcacagcgtagcgcctgaatcgcaagacggtgacgcgccgaccaaaaaacgc
cgtcggcgccgtcgtcgtcgtcgcggtagcggcggtggtgaaaacgccgaggccaacggt
gagcacgcagcacacaacgatggcgatgcggcggtggtcgtgaaatcggacacgctggct
gacgtcacgccaagcgatcagggcgaaaccccggtcgttgatgcagtcgttgacgcagtt
gcggttgaagatgcgcccaagccaaagcgcacacgcacccgtcgcaagaaagcggatgca
cctgtcgaaagtgcggaagtgacggagatcgtcgaggccgccttggttgaggcggcaagt
gcggaggctgcggcggaagacgcgcccaagcctaagcggacccgatcacgtcgcaagaag
gccgacgatgtgccaagcgatgacgcaccagcggcacctgttgcagaagcagcgccagtg
ggtgcacctgctgcaaagcccaaacgcgcgccgcgcagtcgcaagaaaccggctgctgca
gtggatgatactgcggttgcggaaacgccggctgaaccaattgctgcgtttcctgctgaa
acgccggaaccggtggtggcagataagcctaagcgtgtgcgcaaaaccacgtccaagcca
aaggttgaacctgaggtggccccagccgccgaaccagtaccagcaccagccgaggctgtt
gtggaagacgcgccggttgccgatgatgcgcccaaaaagcgcggttggtggtctttggga
cgctaa
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