Octadecabacter arcticus: OA238_c19890
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Entry
OA238_c19890 CDS
T02539
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oar
Octadecabacter arcticus
Pathway
oar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OA238_c19890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oar03400
]
OA238_c19890 (mfd)
Enzymes [BR:
oar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OA238_c19890 (mfd)
DNA repair and recombination proteins [BR:
oar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OA238_c19890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
MFD_D3
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGI72092
UniProt:
M9RIS2
LinkDB
All DBs
Position
complement(2091652..2095116)
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AA seq
1154 aa
AA seq
DB search
MTKIQAKPVPNPKHVTISGAPEGFDARLILAEAESGAVVHICRDDKRVEAMRAALAFFAP
DMPVLIFPSWDCLPYDRVSPNADVSAARMAVLAGLAHGMPERFVLLTTLNAATQKVPARS
VLREAAFSASVGSRIDEAALRAFLVRMGFTQAPTVMEPGDYAVRGGIIDIYPPGQIGPVR
LDLFGDDLEGARRFDPATQRTTETLDVVDLAPVSEVILDDAAITRFRQNYRLEFGAAGTD
DPLYEAVSAGKKHAGVEHWLAFFHAELETLFDYLTGATVTLDEQNAAQRDARWVSIDDQY
DARREAMLAKGRMDSVYKPAAPSGLYLDGPAWDAALRNFRVMQLGALPQATGPGVIDAGG
RIGRNFAPERQQESVSLFGALADHLKAKLELGPVVVASYSQGARERLIGLIEDKGIAETI
PVTDFSRIGKRGLHMAVWALEHGFESQGITVVSEQDVLGDRLIRQTKRKRRAENFLTETQ
SLTPGDLVVHVDHGVGRYLGMEVVTALGAAHECLLLEYAESSKLYLPVENIELLSRYGHE
VGLLDKLGGGAWQAKKAKLKERIREMAERLIRVAAERELRTAPALTPPEDMWEQFLARFP
YAETDDQLRAIEDVLDNLGSGKPMDRLVCGDVGFGKTEVAIRAAFVAAMSGVQVAIVAPT
TLLARQHYKGFAERFRGFPINVRTLSRFVSAKEAALTKDGMAKGTVDIVIGTHALLAKNI
RFKDLGLLVIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGVRELSIIGT
PPVDRLAIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRISDLPEIEAFIRDEVPEVSF
VIASGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQ
IRGRVGRSKARAYAYLTYKPRQKLTPQAEKRLRVLGSIDTLGAGFTLASQDLDIRGAGNL
LGEEQSGQMREVGYELYQSMLEEQIAKIRSGEVTLVEDGQWAPQINLGVPVLIPEAYVPD
LDVRLGLYRRLSDLTTKVELEGFAAELIDRFGTLPKEVNTLMLVVRIKAMCKKAGISQLD
AGPKGAVLRFHNDKFISPVGLVEFIDDQRGQAKVKDNKIVIRRDWGTDRLKIQGAFAIAR
DLAAKVKEAKTAKP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaattcaagccaaacccgttcccaaccccaaacacgtcaccatctccggagcg
ccggaaggttttgacgcccgcctgatactggccgaggccgagagcggcgcggttgttcat
atctgtcgtgacgacaaacgggttgaggcgatgcgcgcggcactggcgttcttcgcgccc
gacatgcccgtgttgatctttcccagttgggattgcctgccctatgatcgggtgtccccg
aacgcggatgtgtctgcggcccgcatggcggttttggcaggtcttgcacacgggatgccg
gaacggtttgttttgctcaccacgttgaacgccgccacccaaaaggtgcctgcgcggtca
gtcttgcgcgaagccgcattttccgccagtgtcggcagccgtatagacgaggccgcgctg
cgggcgttcttggtgcgcatgggctttacgcaggcgccaacggtgatggaaccgggcgat
tacgccgtgcgtggtggcatcatcgatatttatccacccggtcagattggtccggtgagg
ttggacctgtttggtgatgatcttgagggcgcgcgccgctttgatccggcgacgcagcgc
acgacggaaaccctagacgtcgtagaccttgcgccggtgtccgaagtgattttggatgac
gcggcgatcacccggtttaggcagaactatcggttggaatttggcgcggcgggcacggat
gatcctttgtatgaggcggtgtcagcgggcaaaaaacacgcaggcgttgagcactggctg
gcgtttttccatgccgagcttgagacattgtttgattatctgacgggcgcgacggtcacg
ctggacgaacaaaatgccgcgcaacgtgacgcacgttgggtttcgattgacgatcaatac
gatgcccgtcgtgaggcgatgttagcaaaggggcggatggattccgtctataagcccgca
gcgcccagcggattgtatcttgatggtcccgcgtgggatgcagcgttgcgcaattttcgc
gtcatgcagcttggggcgttgccgcaggccacgggacctggtgttattgacgcaggcggg
cgcatcgggcgaaacttcgcgcctgaacgacagcaggaaagtgtcagtcttttcggggct
ttggcagatcatcttaaagcaaagcttgaactgggaccagttgtcgtcgcgtcctattct
caaggtgcgcgcgaacgcctgattggtttgatcgaagacaaaggtattgcggaaaccatt
ccagtcacagatttcagccgcatcggtaagcgcgggctgcatatggcggtttgggcgctg
gaacacgggtttgagagtcagggcatcaccgtggtgtctgagcaggatgtgctgggggat
cgcctgatccgccaaaccaaacgcaaacgtcgcgccgagaattttctgacagagacccaa
agcctgacgccgggtgatttggtggtccatgtggatcacggtgttggccgctatctgggc
atggaggttgtgacggcacttggggccgcccatgaatgtctgctgctggaatatgccgaa
agttccaagctttatctgccggttgagaatattgagctgctgtcacgttatggccacgag
gttggactgctcgacaaattgggcggtggcgcctggcaagccaagaaagccaagctgaaa
gaacgcatccgcgaaatggcggaacgcctgatccgcgtcgcggccgaacgtgaattgcgc
actgcgcctgcgttgacgccgcccgaggacatgtgggagcagtttttggcgcggttccct
tatgcggaaaccgacgaccaattgcgggcgattgaggatgttctggacaatctgggatcg
ggcaaaccgatggatcgtctggtctgtggtgatgtgggtttcggcaaaaccgaagtcgca
attcgcgccgcgttcgtggccgcgatgtccggcgtgcaagtggcgattgtcgcaccaaca
acgcttttggcgcgccagcactacaaagggttcgcggaacggttccgcggatttccgatc
aatgtcaggacgttgtcgcgctttgttagcgcaaaagaagccgcgctgacgaaggacgga
atggccaaaggcacggtggatatcgtcattggcacccacgcgttgttggcgaaaaacatc
cggttcaaggaccttgggctactggtcattgacgaagaacagcactttggcgtgcaacac
aaagaacgcctgaaacagatgcgcacggacattcacgtgctgacgctgacggcgacgccg
atcccgcgcacgctgcaattgtcgttgtccggtgtgcgtgagttgagcatcatcggaaca
ccgccagtcgatcgtttggcgatccgaacctacgtaagcgaatttgataccgtgacgatc
cgcgaggcgttgttgcgtgaacattaccgcggcgggcagtcgttctttgttgtgccacgg
atttcggatttgcccgagattgaggcgttcattcgtgatgaggtgccagaggtgtcattc
gtcatcgcgagcgggcagatggcagccggagagttggatgaccggatgaatgcgttttat
gacggaaaatacgacgtcttgctggcgacgacgattgtggaaagcggcttggatattccg
acagcgaatacgatgatcgttcaccgtgccgatatgtttggactggcgcaactgtatcaa
attcgcggacgggtgggccgatccaaggcgcgggcctatgcctatctgacctacaagccg
cgccagaaattaacgccgcaggccgaaaagcggctgcgggttttggggtcgatcgacacg
ctcggggccgggttcacgcttgcgtcacaggatctggacattcgcggcgcgggcaatctg
ctgggcgaagaacaatccggtcaaatgcgcgaagttggctatgaattgtaccaatccatg
ctggaagaacagatcgccaagatcaggtccggcgaagtgacattggttgaggatggccaa
tgggcgccgcagatcaacctcggcgttccggtgcttattcccgaagcctacgttcctgat
ctggatgtgcgtctggggctgtatcgccgcctgtcggatctgacaaccaaggttgaactg
gaagggtttgccgcagaattgattgaccggttcgggacattgccgaaagaggttaacacc
ctgatgctggtcgtgcgtatcaaagcgatgtgcaaaaaggctggtatcagccagcttgac
gcagggccaaagggtgcggttttgcgatttcacaatgacaaattcatctcccccgtgggg
ctggtggaattcattgatgatcagcgcgggcaggctaaagtgaaggacaacaagatcgtg
atcaggcgcgattggggcacggaccgtttgaagatccaaggtgcgttcgccattgcccgc
gatcttgcagctaaagtgaaagaggccaagaccgcaaagccatag
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