Octadecabacter arcticus: OA238_c31700
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Entry
OA238_c31700 CDS
T02539
Symbol
topA
Name
(GenBank) DNA topoisomerase1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
oar
Octadecabacter arcticus
Brite
KEGG Orthology (KO) [BR:
oar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oar03032
]
OA238_c31700 (topA)
03400 DNA repair and recombination proteins [BR:
oar03400
]
OA238_c31700 (topA)
Enzymes [BR:
oar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OA238_c31700 (topA)
DNA replication proteins [BR:
oar03032
]
Prokaryotic type
DNA Topoisomerases
OA238_c31700 (topA)
DNA repair and recombination proteins [BR:
oar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OA238_c31700 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGI73167
UniProt:
M9RLV9
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Position
3360871..3363540
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AA seq
889 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGPGYTVLASYGHVRDLPPKDGSVDPDNDFDMLWEIASDSKK
HIKAIADALADDNELILATDPDREGEAISWHLEETLRKRKSIKKDTPVSRVVFNAITKTA
VTEAMKNPRQVDVPLVEAYLARRALDYLVGFKLSPVLWRRLPGAKSAGRVQSVSLRIIVE
REMEIEAFNNREYWSVKAQLSTPRNQAVETRLTVLAGKKLDKFDLENATQAELAEQAVKS
RDLTVKRVEAKPANRNPSAPFMTSTLQQEASRKFGFGARMTMNAAQRLYEAGLITYMRTD
GIDMAPEAITAARDAIAAKFGKDYVPDTPRIYKNKAKNAQEAHECIRPTDLMLDAETAKI
ADPDQRKLYDLIYKRTVSSQMAAARMERTSVDFGSADGQVELRATGQVVLFDGFLAIYEE
GRDDDAADDDGDDKRLPQMAEGEKMAKSSVVAEQHSTQPPPRYTEATLVKRMEELGIGRP
STYASIVTTIQDREYVRKEKNRLIPEDKGRLVTAFLTNFFRKYVGYDYTASLEEELDHVS
AGEADYKKVLSDFWGDFKITIDEAMDMSITQVLDKINEVLAPHIFPPNEEGTDPRLCPNC
NVGRLSMRTARSGGAFIGCSNYPECKYTRAFGPPGQDDASGIPPEGKELGMDDGDKIWIH
KGRFGPYAQRGEVTEENKKPNRQSVPKEWPPEDVTLETAVKLLSLPRLIGTHPEDGVNVF
ANIGRYGPYIKHAESTSERGGTNANLEGLDDVFTVGMNHAVQLLAEKVASRGNRGGAAKT
LKSLGDHPDEGGPIDIMEGKYGPYVKWEKVNATLPKDSDPEALTIQQAVDLITEKQAKKG
TKRKAPAKKKAAPKKAPAKKAAAKKTAAKKPAAKKAAPKAIDTGDDVLE
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttgttgtcgttgagtctccggctaaggccaagacaatcaacaagtatttgggg
ccaggctacacagtcttggcgtcctacggccacgtccgcgacctgcccccaaaggacgga
tcagtcgaccctgacaacgatttcgacatgttgtgggagatcgcaagcgacagtaaaaag
cacatcaaagccattgccgacgcccttgcggatgacaatgaactgatcctcgcgaccgac
cccgaccgtgaaggcgaagcgatttcatggcaccttgaagagacattgcgcaaacgcaaa
tcgatcaagaaagacacgcccgtttcgcgcgtcgtgttcaacgcgatcaccaagactgcc
gtcaccgaggcgatgaaaaatccacgccaagtcgatgtgccactggttgaggcttacctt
gcgcggcgcgcacttgattatctcgttggcttcaaactttcgccagtcctgtggcgccgc
cttcccggtgcaaaatccgcgggccgcgtgcaatcggtgtccctgcgcatcatcgttgaa
cgcgagatggagatcgaggcgttcaacaaccgcgaatattggtccgtcaaagcccagcta
tcaacgccgcgcaaccaagcggttgagacccgactgaccgttctggctggcaaaaagctc
gacaaatttgatcttgaaaatgcaacgcaggcggaacttgcggaacaggccgttaagtcc
cgcgatctgaccgtcaagcgcgtcgaagcgaaacccgccaaccgcaatccgtccgcgccg
ttcatgacgtccaccttgcaacaagaagcgtcgcgcaaattcggatttggcgcgcgcatg
acaatgaacgccgcgcagcgtttatacgaagcgggtctgatcacctacatgcggaccgac
ggcatcgacatggcccccgaagccataactgctgcgcgcgacgcaattgctgcaaaattc
ggcaaagactatgttcctgacacgccacgcatctataaaaacaaagccaaaaacgcacaa
gaagcgcacgaatgtatccgcccgaccgatctgatgttagacgcagaaacggcaaaaatt
gccgatccggaccaacgcaaattgtacgatttgatctacaaacgcacggtgtccagccag
atggccgccgcccgcatggaacgcacaagtgttgatttcggcagcgcagacggacaggta
gaactgcgcgcgacgggccaagtcgtgctgtttgacggctttcttgcgatttacgaagaa
ggccgcgatgacgacgcggcagatgatgacggcgacgacaaacgcctgccccaaatggct
gagggcgaaaagatggctaagtcatccgttgtggctgaacagcattccacccagccgccg
ccccgctacaccgaagcgacgcttgtcaaacgcatggaagaactcggcatcggtcgcccg
tccacctacgcgtcaattgtcacgacgattcaggatcgcgaatatgtccgcaaagaaaaa
aaccgcctgatccctgaagacaaaggtcgcttggtcacagcattcctgaccaatttcttc
cgcaaatacgtcggttatgactataccgcatcgctggaagaagaactcgaccacgtgtca
gcaggcgaagctgactacaagaaagttctgtctgatttttggggtgacttcaaaatcacc
atcgacgaagcgatggatatgtccatcacgcaagtccttgacaaaataaacgaagtcctc
gcaccgcacatcttcccgccgaacgaagaaggcaccgacccgcgtctttgcccgaactgt
aatgtgggccgcttgtccatgcgcaccgcgcggtctggcggcgcctttatcggctgttcc
aactaccccgaatgcaaatacacccgcgcctttggcccccccggtcaagacgatgcatcc
ggcatcccgccagaaggcaaagaattgggcatggacgacggtgacaaaatctggatccac
aaagggcgctttggcccctacgcccagcgcggtgaggtcacggaagaaaataagaaaccg
aaccgccagtcggtcccgaaagaatggccgccagaagacgtcacgcttgagacagccgtc
aaattgctgtcactgccccgtctgatcggcacccaccccgaagacggcgtcaatgtattc
gccaacatcgggcgctatggtccttatatcaaacacgcagaatccacatccgagcgtggc
ggcaccaatgccaatcttgaggggcttgacgacgtgttcaccgtaggcatgaaccatgcc
gtacagcttctggccgaaaaagtcgcgagccgtggtaatcgcggcggggcagctaaaact
ttgaaatcgcttggtgatcacccagatgagggcggaccaatcgacatcatggaaggcaaa
tacgggccatacgtgaaatgggaaaaggtcaatgcgaccctgccaaaagacagcgatcca
gaggcgctgacaatccaacaagctgttgatctgatcaccgaaaagcaggccaaaaagggc
accaaacgcaaagcccctgccaagaaaaaggcagcccccaagaaggcaccagcaaagaaa
gctgcagcgaaaaagactgctgccaagaaacccgcagcaaagaaggcagcgccgaaagcc
atcgataccggtgatgacgttctggaatag
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