Octadecabacter arcticus: OA238_c35770
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Entry
OA238_c35770 CDS
T02539
Symbol
rhlE2
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oar
Octadecabacter arcticus
Pathway
oar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OA238_c35770 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oar03019
]
OA238_c35770 (rhlE2)
Enzymes [BR:
oar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OA238_c35770 (rhlE2)
Messenger RNA biogenesis [BR:
oar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OA238_c35770 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Helicase_RecD
P-loop_SecA
UvrD-helicase
HEM4
Motif
Other DBs
NCBI-ProteinID:
AGI73544
UniProt:
M9RLS7
LinkDB
All DBs
Position
complement(3812652..3813971)
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AA seq
439 aa
AA seq
DB search
MLGLAPRLIAELKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLL
KEQGKPEGKTARALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERG
VDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTML
FSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRD
ERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATDVA
ARGLDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKAMK
ADIPVAGGRPWEKSEEEAKPKRGGGGGGGGRRFGGGGGGGGRPGGKPGGGRPNAGGGRPA
GGGGGGGGNRRRKPSSASA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcctcgcgccccgactgattgctgaactgaaaagccaagggatcgttgatccg
acgccgatccaagcacaggcaatcccacatgcaatgaatggccgcgacgtcatgggcctc
gccaaaacgggcagcggtaagactgcggcgttcggactgccgatgattgatatgctgctg
aaagagcaaggcaagcccgagggtaagactgcccgcgctttgatcctcgcgccaacgcgt
gagcttgccaaacagattcaagaaaacctcgaggcctatacgaagggcacccacctcaag
accatgctggtcgtcggtggcgcaggtattacgggtcaaatccgtaaactggaacgcggc
gttgacctgttggtcgccacgccgggtcgtctgatcgacctgctggaacgccgcgctgtg
cgtttgggcgatacgaagttcttggtcctcgacgaagcggaccagatgctcgacatgggg
ttcatccatgcgctgcgccagattgcaccgctgctggccccagaacgtcagacgatgctg
ttttcagcgacaatgccgaaattgatggccgaactcgcgggtgctttccttaagaatccg
atgcgcgtgcaggtcgatgcacccggcaaacctgttgagcggattgaacaatcggttcac
ttcgtcgccaaggcggcaaagactgatttgttgctcgaactgatcgacaagcaccgcgat
gaacgcgcgattgtcttcggtcgcaccaagcacgggtctgaaaagctgcacaagctgctg
gcgagcaagggctttttgtctgcgtctatccacggcaataaatcccaaggtcagcgcgat
cgcgcgattaccgatttcaaagcgggcaaggtgacaatcctggttgcgacggatgttgcg
gcgcgtggtctggatattccagaggtgaagcacgtttataactacgacctgccaaacgtg
gccgaaaactatgtccaccgtattggccgcacggcgcgcgctggtgcggatggcatggca
attgcgttctgtgcgcccgatgaaatgggcgaattgcgcgacatccaaaaggcgatgaag
gctgacatcccagtggccggtggtcgcccatgggagaaatccgaagaagaagccaagccc
aagcgcggtggcggtggcggcggtggtggccgtcgttttggcggaggtggcggtggcggc
ggacgtccgggcggcaagcctggtggtggtcgcccgaatgctggcggcggtcgccccgct
ggtggtggtggtggtggcggcggcaatcgccgtcgtaagccgagcagcgcttcagcgtaa
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