Ovis aries (sheep): 100196905
Help
Entry
100196905 CDS
T03117
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
oas
Ovis aries (sheep)
Pathway
oas04151
PI3K-Akt signaling pathway
oas04510
Focal adhesion
oas04512
ECM-receptor interaction
oas04518
Integrin signaling
oas04974
Protein digestion and absorption
oas05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100196905 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100196905 (COL2A1)
04518 Integrin signaling
100196905 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100196905 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100196905 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100196905 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oas00536
]
100196905 (COL2A1)
Glycosaminoglycan binding proteins [BR:
oas00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100196905 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100196905
NCBI-ProteinID:
XP_042102731
LinkDB
All DBs
Position
3:138585101..138615357
Genome browser
AA seq
1488 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGWQPGPKGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM
GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGAR
GLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEP
GDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGTPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA
GPVGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATL
KSLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET
GETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGHLKKALLVQGSNDVEIRAEGNSRFTYTVLKDGCT
KHTGKWGETVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtggttggcaa
ccaggaccaaagggacagaaaggagaacctggagacatcaaggatatcgtaggacccaag
ggacctcctggacctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgac
aaaggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctgga
aaccctgggccccctggtcctcccggcccccccggcccccctggccttggtggaaacttt
gctgcccagatggctggtggatttgatgagaaggctggtggcgcccagatgggagtaatg
cagggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccgga
cctcaaggatttcaaggcaaccctggtgaacctggggaacccggtgtctctggtcccatg
ggcccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaag
cctggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccagga
accccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaag
ggagaagctggtgctccgggtgtgaagggtgagagtggttccccaggtgagaacggttct
ccaggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgccggc
gctgcaggtgctcgaggcaatgacggtcaaccaggccctgcagggcctccgggtcccgtg
ggtcctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggcccc
accggtgctcgaggtcccgaaggcgcccagggtcctcgtggtgaacctggtactcctggg
tcccctgggccagctggcgccgctggcaaccctggaactgacggaatccctggagccaag
ggatctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtcca
cccggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggt
attgctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaa
ggagcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagagcctggtggt
gctgggcccgccggtccccctggagaaagaggcgctcctggcaaccgtggtttcccaggt
caggatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggccttgct
ggtcccaaaggagccaacggtgaccctggccgtcccggagagcctggccttcctggagcc
cggggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccgga
gcccctggtgaagatggtcgccctggacccccaggcccacagggagctcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgcaaatggtgagcctggcaaagctggtgag
aaaggactgcctggtgctcctggcctgagaggtcttcctggcaaagatggtgagacaggt
gctgcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcct
gggccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaag
ccaggtgaccagggtgttcctggtgaagctggagctccgggccttgtgggtcccaggggt
gaacgaggtttccccggagaacgtggctcccctggttcccagggcctccagggggcccgc
ggcctccccggcactcctggcaccgatggtcccaaaggcgcagctggcccagctggcccc
cctggggctcagggccctccaggtctacagggcatgcccggcgagaggggagcagctggt
attgctggacccaagggagacaggggtgacgttggtgagaaaggccccgagggcgcgcct
gggaaggacggtggacggggtctgactggccccattggcccccctggcccagccggtgcc
aacggtgagaagggagaagttggaccccctggtcctgccggaactgctggtgctcgaggc
gccccgggtgaacgtggagagacaggccctcctggacccgctggattcgccggcccccct
ggtgctgatggccagcctggtgccaaaggtgaacaaggagaagccggccagaaaggtgac
gctggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggt
gtgactggtcctaaaggagcccgaggtgctcaaggccccccgggagctaccggattcccc
ggagcagctggccgtgtcggacccccaggctccaatggcaaccctggaccccccggtcct
cctggtccttctggaaaagatggtcctaaaggtgctcgaggagacagcggcccccctggc
cgagctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcct
ggagatgatggcccttctggtcccgacggtcctccaggtcctcagggtctggctggtcag
aggggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggcctccccggc
ccctcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccct
ggccctgtgggtcctcctggcctgactggtcctgctggcgagcctggacgtgagggaacc
cccggtgctgacggcccccctggcagagatggcgcggctggagtcaagggtgaccgtgga
gagactggtgctgtgggtgcccccggagcccctgggccccctggctctcctggtcccgcc
ggcccagttggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacct
gcaggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaagga
gaaactggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcag
ggtctgcccggcccccctggtccttctggagaccagggtgcctccggtcctgcaggtcct
tctggccccagaggtcctcctggccccgtcggtccctctggcaaagatggtgctaacgga
atccctggccccattggacctcctgggccccgtggacgttccggcgagactggccctgct
ggtcctcctggaaaccctggcccccctggccctcctggcccccccggccctggcatcgac
atgtccgcctttgctggccttggccagagagagaaaggccccgaccccctgcagtacatg
cgggctgacgaggcagccggcaacctgagacagcacgatgccgaggtggacgccacactc
aagtccctcaacaaccagatcgagagcctccgcagccctgaaggctcccgcaagaaccca
gctcgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactgg
atcgaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagact
ggtgagacctgcgtctaccccaacccggccagcgtccccaagaagaactggtggagcagc
aagagcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttc
agctatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgc
ctgctgtccaccgagggctctcagaacatcacctaccactgcaagaacagcattgcctac
ctggacgaagctgctggccacctcaagaaggctctgctcgtccagggctcaaacgacgtg
gagatccgggctgagggcaacagcaggttcacatacaccgttctgaaggacggctgcacg
aaacacaccggtaagtggggcgagactgtgattgagtaccggtcacagaagacctcacgt
ctccccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtg
gacatagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
