Ovis aries (sheep): 101103125
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Entry
101103125 CDS
T03117
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
oas
Ovis aries (sheep)
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oas03019
]
101103125 (FOCAD)
Messenger RNA biogenesis [BR:
oas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101103125 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
101103125
NCBI-ProteinID:
XP_027820372
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Position
2:89099675..89397818
Genome browser
AA seq
1805 aa
AA seq
DB search
MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENSFSEKIHQCTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMKLLQMQAVKEGHSG
EKNIQDIYNIRNHPQPLITVLEHRPDCWPVILQQLTAFFQQCLERSEVSSIQIMAPFLWY
LYCEPSQLQEYAKLRLTLLKVLLKPRVPCDKEQPSVLEQQILQLCCDMVPCLQIKDLIQT
TEVMLFIEEVYLNLLRYPVFWKIQLTQITLQLLCVCEVSLNITGECSSLIHLLEHSVELL
KEDFPVEPVIIGIALLLLQTPASQQKPILSLALKLLSCAESQKIPKSSLLLVMPVLQILS
STALEDCISMDEEGPSRQQLALNLLEMVQQECYRDEHQKLSYKLAFPITSMYGSIFTAWR
ILEVMREESAASDWLASVESLLPITTVIPAHVFLLLAYLLVEDKGRNLHQILKVTTELAQ
ADSSQVPNLIPVLMFKLGRPLAPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPQLK
AVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTR
PLILKTLSELFSLVPSLTVNTAEYENFKVQVLSFLWNHTQNKDPVVANAAYKSLSHFGAG
DHTILHLPEEVRPEIQTPDDLDEDEDEEGDEKEVDLSIPGSCYLKLLSLTDPAVLPALEE
FFTSLVKQEMVNMPRGVYHSALKGGARLDQGKTVAGIPNFMLKMYETNKQPGLKPGLAGG
MLFCYDISMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAY
MTRAYHAILQGRIGELELQLKHGKEGPEEVQYKKNTAWLWVRDMLTDEITKAAAKDSPVV
KGNALLALSSLAVVVSKHEASLCSDSDGVLEVQPHFLSVKDWVSMVSDTLLVIVDSHYQP
RGHFFSSFYHKSYSGENTASAIARSAAATALSLLVPIFIISCKEKVEEILNMLTARLPGK
PSADESQAVQIHMGLALGMFLSRLCEEKLSDISSQQMNLLLMKSLDALENCCFDPSLEYN
TGCILGVGLVLSLMSHSGQTESRVHVAASLRKLSEYLDDSGSQSRTFQEVLAYTLSCVCT
SAFSAGIVEAVEAEEVMNKLRLLVDNSQQTSGFALALGNIIHGLSVCGHGKAEDLGNRLL
PAWIKTVLTEGAPTMLCLAALHGMVALVGSEGDVMQLKSEAIQSSQSQGRLNEVIRTLTQ
VISVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPESSFIRAAIGFFVTGGK
KGPESVPPSLLKVVMKPIATVGENHQYPPVNWAALLSPLMRLNFGDEIQQLCLEIMVTQA
QSSQNVTALLGMWVMPPLIHGLSLNIKKYLLLSVPSWIKHVSDEQIVGFVESLMVAVFKA
ASPLSSPELRPSALQGLSQAMKLPSPSHHLWSLLSEATRKIFDLLPNKIRRNDLELYISV
AKCLSEMTDDEANRIAQITESSLEKAAFVRLYLVSQGRFPLMGLTDVLSVAVRHREKDTL
AWMTLHSLYQARIVSHANTGVLKRMEWLLELMGYIRNVAYQSMYVQNVALDEALDFLLLI
FAAAVVAWADHAAPLLLGLSASWLPWHQENGPAGPASSLLGRSPLHRVTLQEALTLLPSS
MPLLLQKEPWKEQTQKFIDWLFSIMESPKEGLSAKSKDLLKATLLSLRVLPEFKKKAVWT
RAYGW
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgacataaggaaaaggtttgaatttccaaattctcttatccagtcacaggct
gtgggtcatcttattgctgcagttctaaaggaaaacagcttttcagaaaagatccaccag
tgcacaaaccagactccggccttgaacttgctgtgggagaagtgttgcagcgacaatgtc
gtcgttcgaacagcttgctgcgagggtctggtggcccttgtcgctcaggatcacgcggag
ttcagctatgttctcaatgggattctcaacctgattccatcaaccaggaatacacatggc
ttgataaaagccattatgaagctattacaaatgcaagctgttaaggaaggacacagtggg
gagaagaatattcaggatatatataatattagaaaccatcctcagcctttgatcactgtt
cttgagcacagacctgattgctggccagtcattttgcagcagctgacagcttttttccag
caatgccttgaaaggtctgaagtttcaagtatccaaattatggcaccatttctatggtat
ctatattgtgaaccatcccagttacaagaatatgctaagctccgattaactctgctcaaa
gtcttacttaaaccccgggtcccatgtgacaaagaacaaccatcagtattggaacaacag
atactacaactgtgttgtgacatggttccatgtttgcagatcaaagatttgatacagaca
acagaagtgatgctgtttattgaagaagtatacttaaaccttttgcgttatcctgttttc
tggaaaattcagcttacccagataacccttcagctgctgtgtgtctgtgaagtcagctta
aacataactggggaatgctcatctttaattcaccttttagagcatagtgttgaacttctg
aaagaggattttcctgttgaaccggtcataattggaatagctttgctacttctacagact
ccagcaagtcaacagaagccaatcttaagtctagctctgaagctcctttcttgtgctgag
agtcagaagatcccaaagtcctcgttgctgctagtgatgccagttctgcagatactatct
tctactgccttggaagactgtatatccatggatgaagaaggtccctctaggcagcagttg
gctctaaaccttttagaaatggtacagcaggagtgctacagagacgagcaccagaagctc
tcctacaagcttgcgttccccataaccagcatgtatggttcaatatttacagcctggagg
atccttgaagtaatgagagaagagtctgcggcaagtgactggctggcttccgtggagtca
ctgctccctataaccacagtgatccctgctcatgtctttcttctgctggcttacctcctt
gttgaagataagggacgaaatcttcaccaaatactgaaggtcactacagaattagcccag
gccgattcctctcaggtaccgaatctgattccagttttgatgttcaaattaggaagacca
ctggcacctgtgttatacaatgatatcttgtatactttacctacacttggtgttcacaag
gtgtgcataggacagattctacgagtaattcaacttcttggaaccactccacaactaaaa
gctgtcactttgcgcttgctgacatctttgtgggaaaaacaggatcgtgtctaccctgaa
ctgcagcgtttcatggccatgtccgatgtgccctctctgtctgtgggcaaggaagtccaa
tgggagaaactaattgctaaagcagcatcaattagagacatatgtaagcaaaggccatat
cagcatggtgcagatatgttggcagctatttcccaggtgctgaatgagtgtactaagcct
gaccaagctactccagcagccttggtgttacaaggtcttcatgcactctgccaagctgag
gtggtttgtattcgctccacttggaatgctctctccccaaagctgagctgtgacacaagg
cctctcattctgaagaccctcagtgagctgttttctctggttccttccttaacagtcaat
acagctgagtatgagaattttaaagttcaagtcctcagcttcctctggaaccatactcaa
aacaaggacccagttgtcgcaaatgctgcctataaatctctgtcacactttggcgcgggg
gaccacacaattcttcatctgcctgaagaggtaagaccagaaatccaaactcctgatgac
ctagatgaagatgaagatgaggagggtgatgaaaaagaggtggatctttccattccgggc
tcttgctatctcaaacttttgtcactcacagatcctgcagttttaccagctttggaggaa
ttttttacatcacttgtgaagcaagaaatggtgaatatgccccgtggggtgtatcactct
gcattgaaaggaggtgcccgcttagatcaaggaaagactgtagcaggaatccccaatttt
atgttgaaaatgtacgaaacaaacaagcagccaggtttgaaacctggccttgcgggtggc
atgttattttgttatgatatttcaatgtatcagagtaaagatggcaagccattgaatcga
ctgatggccagtagagggcgaagcttcaagcagacctcgcttgctctagtgcatgaggtt
catatccagctttccgagtggcaccgggcaatttttctcccccaggcctggctcgcgtat
atgactcgtgcttatcatgccattttacagggaaggataggagaactggaattgcagtta
aaacatggaaaagaaggacctgaagaggtgcagtacaaaaaaaacacagcctggctctgg
gttcgagacatgttgactgatgaaatcaccaaagcagctgcaaaagacagcccggtggtc
aaaggcaacgcgctgttagccttaagcagccttgctgtcgtcgtttccaaacatgaagcc
agcctctgctcagactctgatggagtcctggaggttcagcctcacttcctgtcagtgaaa
gactgggtttccatggtatctgatacccttttggtcatcgttgatagccactaccaaccc
agaggacactttttctcctcgttttatcataaatcctattccggtgaaaacacggccagt
gccattgcccgttctgcggccgccacggctttgtctctcctggtgccaattttcattatc
tcttgcaaagagaaggttgaggaaatcctgaacatgctgactgccaggttacctgggaaa
ccaagcgctgatgagtctcaagccgtgcaaatccacatgggccttgcactggggatgttt
ctctctcgcttgtgtgaggagaaactcagtgatatatctagccaacagatgaaccttctt
ctgatgaagtctttggatgccctggaaaactgctgctttgaccctagtcttgaatacaac
acgggctgtatactgggagttggactcgtcctgtccctcatgagtcacagcggccagacg
gagtcccgagttcacgtggcagcctcgcttcggaagctctccgaatacctggatgacagc
gggagccagagcagaaccttccaggaggtccttgcctataccctcagctgtgtatgtaca
tctgcgttcagtgccggcatcgttgaggcagtggaggccgaagaggtcatgaacaagctt
cgactgttagtggacaacagccagcagacttcaggttttgccctggcgttaggaaacatc
attcacggcttgtctgtgtgtggacatggaaaagctgaagacttgggcaacagattgctt
ccggcctggatcaaaactgtcctaacagagggtgctcccacaatgctttgcttggcagct
cttcacggcatggtggccttggtaggctccgaaggggatgtaatgcagctgaagtcagaa
gccatccagtcctctcagtctcaaggcagacttaatgaagtcattagaactttaactcag
gtcatcagtgtgtctggggtgattggtcttcagtcaaatgccatctggcttctaggacat
cttcatctgtctactctgtcctcaaatcaaagtagaacctcggtgcctactgactacagc
tatttgcctgaaagcagttttattagagcagccattggcttcttcgttacaggaggaaaa
aaaggtcctgaatctgtgcccccttcccttctcaaagttgtgatgaaacccatagcaact
gttggagaaaaccaccagtatcctcctgtgaactgggctgctctcctctctccacttatg
aggctaaactttggtgacgagattcagcaactgtgtcttgaaattatggtgacccaggca
cagtcctcccagaatgtcactgcactgttgggaatgtgggtgatgccacctctgatccat
ggtctgagtctgaatatcaagaaataccttctcctatctgtgccttcatggataaaacat
gtctctgatgaacagatcgtgggttttgttgaaagcttaatggtggcagtttttaaagca
gcttccccactctccagtcctgagttacgcccaagtgccttacagggcctgagtcaggcc
atgaaactgcccagcccttcccaccacctctggagtctgctcagcgaggctactaggaaa
atttttgacctcctgccaaataagattcggagaaatgatctagagctgtatatcagcgta
gcaaagtgcctctcggaaatgaccgatgatgaagccaatcggattgcccagattaccgag
agtagcctagaaaaggctgcctttgtcaggctctacttggtctctcaaggacgattcccc
ttgatgggcttgactgatgtgctcagtgttgctgtccggcaccgtgaaaaagacacgctg
gcctggatgacactgcacagcttgtaccaggcacggattgtgagccacgccaacaccggc
gtgttgaagagaatggagtggctcttggaactgatgggttatatcagaaatgttgcttac
cagtcaatgtatgttcagaacgtggctcttgatgaggctttggacttcttgttgctgatc
tttgcagccgcagtggttgcatgggcagatcacgctgcccctctcctccttggcctcagt
gccagttggttaccatggcatcaggaaaatggcccagctgggccagcatcaagcttgctt
ggcaggagtccattacacagggtcactctgcaggaggctctcactctccttcccagtagc
atgcctcttctgctgcagaaagagccatggaaggaacagacccagaagttcattgactgg
ctgttcagcatcatggaaagccctaaggaaggactctcagcaaaatccaaggatctttta
aaagctaccctgctgtccttgagagttctcccagagtttaagaagaaggctgtatggacc
agagcctatggttggtga
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integrated database retrieval system