Ovis aries (sheep): 101115066
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Entry
101115066 CDS
T03117
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oas
Ovis aries (sheep)
Pathway
oas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101115066 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oas03019
]
101115066 (MTREX)
03041 Spliceosome [BR:
oas03041
]
101115066 (MTREX)
03009 Ribosome biogenesis [BR:
oas03009
]
101115066 (MTREX)
03016 Transfer RNA biogenesis [BR:
oas03016
]
101115066 (MTREX)
Enzymes [BR:
oas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101115066 (MTREX)
Messenger RNA biogenesis [BR:
oas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101115066 (MTREX)
Spliceosome [BR:
oas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101115066 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
101115066 (MTREX)
Ribosome biogenesis [BR:
oas03009
]
Eukaryotic type
Pre-60S particles
Helicases
101115066 (MTREX)
Transfer RNA biogenesis [BR:
oas03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101115066 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101115066
NCBI-ProteinID:
XP_004017032
UniProt:
A0A6P3EB49
LinkDB
All DBs
Position
16:complement(23927437..24022803)
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGSAEKTGKCFDGKLQSESTNVG
KNKRDADFEGVDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaagaaaaggagaaggggaaatggaagggtccgccagggtct
gcagaaaagaccggaaaatgttttgatggtaaattacaatcagagtcaactaatgttgga
aaaaacaagagagatgcagacttcgagggtgttgatgaacctatttttggaaagaaaccc
agggtggaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaag
gtacagtcagttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtttgtgctgaatatgccattgcattggcactaagg
gaaaaacaacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcctgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtcgtatgggaagaaactattattttgcttcctgataacgttcactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattacagcactatatt
tttccagccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcgaaaaggaggaacaaaaggtccgtcaaacgtattcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttacgcacttcagatgaccaaattagatttcaacacagatgaggaaaagaagatggtt
gaagaagtttttagtaatgcaattgactgcttgtctgatgaagacaaaaagctccctcag
gttgaaaatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttactg
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttatttacaaac
gcccgaaaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttgctacgagtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctactacaagattagacagcagcttgccaaattgggtaaagaaatt
gaagaatacattcacaaaccaaaatattgcttaccctttttacagccaggtcgtttggta
aaggtgaagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaa
tccaatgttaagcctaattctggtgaactggatccgttatatgtagtagaagtacttctg
cgttgtagcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaagtct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttagactttacatccccaaagaccttcgaccactggacaacagacagagtgttcta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagaccctatt
gatgacatgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggccttt
gagcatcgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaagcaacagcactactgagctgctttgtgtttcaggagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaagttggaaattgatgaggagacttatctaagc
tcatttaaacctcacttaatggatgtagtatacacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgccagcctc
tacttataa
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