Ovis aries (sheep): 101122353
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Entry
101122353 CDS
T03117
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oas
Ovis aries (sheep)
Pathway
oas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101122353 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oas03019
]
101122353 (XAB2)
03041 Spliceosome [BR:
oas03041
]
101122353 (XAB2)
Messenger RNA biogenesis [BR:
oas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101122353 (XAB2)
Spliceosome [BR:
oas03041
]
Complex B
Other components
Prp19-related factors
101122353 (XAB2)
Complex C
101122353 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
101122353
NCBI-ProteinID:
XP_004008604
UniProt:
W5NVC5
LinkDB
All DBs
Position
5:complement(14196566..14205252)
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgaggcccgagcgaccggaccttgtcttcgaggaagag
gacctcccctatgaggaggagatcatgcggaaccagttctccgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcagctgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggcg
caggtgaagcatcgctgtgtgaccgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacacgccgaacttttgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgccgtgcggggctaccggcgcttcctcaagctgagccccgaaagcgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggacgaggcggcgcagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaacgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcactggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
caattcgaagagagtatgatcgcagcgaagatggagaccgcctcggagctggggagggag
gaggaggacgacgtagacctggagctacgcctggcccgcttcgaacagctcatcagccgg
cggcccctgctcctcaacagtgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgca
tttgccaagttttacgaggacaacgggcagctggacgatgcccgagtcatcttggagaaa
gccaccaaggtgagtttcaagcaggtggacgacctggccagtgtgtggtgtgagtgtggc
gagctggagctccggcatgagaactatgatcaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtatgaccgcatcctggacctgcgcatcgccacgcctcagatc
gtcattaactacgctatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacctac
ctgacaaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggcgctggatggctgccctcccaaatatgccaagacgctgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcgacacgccatggcagtgtatgagcgtgccacc
agggctgtggagcccgcgcagcagtatgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagtatctatcagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacaacc
ggggccttctggcaaacgtggaaggactttgaggtccggcatggcaatgaggacaccatc
cgggagatgttgcggatccgccgcagcgtgcaggccacgtacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcactgtgtccgacctggcc
ccggggcagagcggtatggatgacatgaaactgctggagcagcgtgccgagcagttggcg
gcagaggcggagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggctgagctggcccagcaggccaacccagaggagattgag
ctgggcgaggacgaggatgaggatgagatggacctggagcccaacgaggtgcgcctggag
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagattga
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