Octadecabacter antarcticus: OAN307_c06290
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Entry
OAN307_c06290 CDS
T02538
Symbol
rhlE1
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oat
Octadecabacter antarcticus
Pathway
oat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OAN307_c06290 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oat03019
]
OAN307_c06290 (rhlE1)
Enzymes [BR:
oat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OAN307_c06290 (rhlE1)
Messenger RNA biogenesis [BR:
oat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OAN307_c06290 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Helicase_RecD
P-loop_SecA
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGI66356
UniProt:
M9R7R3
LinkDB
All DBs
Position
602310..603617
Genome browser
AA seq
435 aa
AA seq
DB search
MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI
DMLLKEQGKPEGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRK
LERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPER
QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELID
KHRDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKILVA
TDVAARGLDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQ
KAMKADIPVAGGRPWEKSEEEAKPKRGGGGGGGRRFGGGGGGGGRPAGKPGGGRPGAGKP
GGGGNRRRKPNNASA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgatatgctgggcctcgcgccccgactgattgctgaactgaaaagccaaggg
atcattgatcctacgccaatccaagcgcaggcaatcccacatgcaatgaatggccgcgac
gtcatgggccttgccaagaccggcagtggtaagacggcggcgttcggcctgccgatgatt
gacatgctgcttaaggagcagggcaagcccgagggcaaaacagcccgtgctttgatcctt
gcgccaacgcgtgagcttgcgaaacaaattcaagaaaacctcgcggcgtatacgcaaggc
acccacctgaagaccatgctggtcgttggtggtgctggtattacgggtcaaatccgtaaa
cttgaacgtggcgttgacctgttggtcgcgacccccggtcgtttgatcgatctgttggaa
cgccgcgctgtgcgccttggcgacacaaagttcttggttctcgacgaagcggaccaaatg
ctcgacatgggtttcatccacgcgctgcgccagatcgcgccgctgctggcccctgaacgt
cagacgatgctgttttcggcgacaatgccgaaattgatggccgaacttgcgggtgcgttc
cttaaaaacccgatgcgcgtgcaagtcgatgcaccgggcaaacctgttgagcggattgaa
caatcggttcacttcgtcgccaaggctgcaaagaccgatctgttgctcgaattaatcgac
aagcaccgcgatgaacgcgcgattgtctttggtcgcaccaagcacggatctgaaaagttg
cacaagctgctggcgagcaagggctttttgtccgcgtctatccacggcaataaatctcag
ggccagcgcgatcgcgcgatcaccgatttcaaagcaggcaaagtgaaaatccttgtggcg
actgatgttgctgcccgtggtttggatattcctgaggtgaagcatatctataactatgac
ttgcccaacgtggccgaaaactatgtccaccgtattggccgcacggcccgtgcgggtgcg
gacggcatggcaattgcgttctgtgcgcctgatgaaatgggtgaattgcgcgatatccaa
aaggcgatgaaggctgacattcccgttgcgggtggtcgcccgtgggagaagtctgaagaa
gaagccaagcccaagcgcggtggcggtggcggtggtggccgtcgtttcggtggtggtggc
ggcggcggtggacgtccggctggcaagcctggcggtggtcgtcctggtgctggcaaaccc
ggtggcggtggcaatcgccgccgtaaaccgaacaacgcctcggcctaa
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