Octadecabacter antarcticus: OAN307_c14790
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Entry
OAN307_c14790 CDS
T02538
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oat
Octadecabacter antarcticus
Pathway
oat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OAN307_c14790 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oat03021
]
OAN307_c14790 (rpoD)
Transcription machinery [BR:
oat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OAN307_c14790 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
DUF1451
Motif
Other DBs
NCBI-ProteinID:
AGI67155
UniProt:
M9RBF6
LinkDB
All DBs
Position
1475375..1477342
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AA seq
655 aa
AA seq
DB search
MAAKDTNVQRDDADHSLDMSQAAVKKMIAEARERGTITYDQLNAVLPPDQVSSDQIEDVM
SMLNEMGIQVTEEEESEEVDDDGTSKELATVAGGRDVVLGGAEAEKLDRTDDPVRMYLRE
MGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVIDL
ETTFGDQLAEETEETAVVSAVSVGEKSDEKPELDADGNPIANDDDDDEEEAANLSLAAME
AQLKPQVLDTLEVIAKGFAKLSDMQDLRMSATLNEDDSFSGKEEKKYQKLRSEIVQLVNS
LHLHNNRIEALIDQLYGINRRIMQIDSNMVKLADQSRINRREFIDAYRGRELDPSWLDEM
GQKAGRGWQMLIERSTTKIEELRAEMAQVGQYVGVDISEFRRIVQQVQKGEKEARQAKKE
MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
ITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKVM
KIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERV
LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRRLRSFLDQ
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaccaacgttcaacgtgacgacgccgaccactccttggacatgagc
caagccgccgtcaaaaagatgatcgcagaagcgcgcgaacgcggcacgatcacctacgat
cagttgaacgcggttttgccgcccgatcaggtgtcttcggaccaaatcgaagatgtgatg
tcgatgctcaatgagatgggcatccaagtcaccgaagaagaagaatccgaagaagttgat
gacgacggcacgtcgaaagaattggcgactgttgctggtggacgggacgttgttcttggc
ggtgccgaggccgaaaagctggatcgcaccgacgatcctgtgcgcatgtacctgcgcgaa
atgggcagtgtcgaattgctatcgcgcgaaggcgaaatcgcgattgccaagcgcattgag
gcgggccgcaacacgatgatccttgggctgtgcgaaagcccgttgacgtttcaggcgatc
acaatctggcgcgacgaattactgtccgaggacattttgctgcgcgacgtgatcgatctc
gagacaacatttggcgaccaattggccgaagaaactgaagaaactgctgttgtttctgcc
gtcagtgttggcgagaaaagtgatgaaaagccggagcttgatgcagacggcaacccgatt
gccaatgacgatgacgatgatgaggaagaagctgcaaacctgtcgcttgccgcgatggaa
gcacagctgaagccgcaggttttggacacattggaagtgatcgcgaagggctttgctaaa
ctttcggacatgcaggatttgcggatgtccgcgacgttgaacgaagacgacagtttttcc
ggcaaggaagaaaagaaatatcagaagctgcgttctgagatcgtacaactggtgaattca
ctgcacctacacaacaaccgcatcgaagcgcttatcgaccagctatacggcatcaaccgc
cgcatcatgcagattgattccaacatggttaagctggccgaccaatcccgcattaaccgt
cgcgaatttatcgatgcctaccgtggtcgcgagttggatccgtcatggcttgatgaaatg
ggccaaaaagccgggcgcggttggcaaatgctgatcgaacgatcaaccacaaaaattgaa
gaactgcgcgctgaaatggcgcaagtcgggcaatacgtcggcgtcgatatttccgaattc
cggcgcatcgttcagcaggtccaaaagggcgaaaaagaagcgcgtcaggccaagaaggaa
atggttgaggcgaacctacgtttggtgatttcgattgcgaaaaagtacacgaaccgcggc
ctgcaattccttgatcttattcaggaaggtaacattggcctgatgaaggccgtggacaag
tttgaatatcgccgtggctacaaattctcgacctatgcgacgtggtggatccgtcaggcg
atcacacgctccattgctgatcaagcccgcacaatccgtattccggtccacatgatcgaa
acgatcaacaagctggtgcgcacgggccgccagatgttgcacgaaattggccgcgaaccg
acgccggaagaactggccgccaagctgcaaatgccgcttgagaaggtgcgcaaggtgatg
aaaattgccaaggagcctatttcgcttgagaccccgattggtgacgaagaagatagccag
ctcggtgatttcattgaagataaaaacgctgttctaccgctggattctgccattcaggag
aacctgaaggaaaccacgactcgggttctggcatcgcttacgccgcgcgaagaacgtgtg
ctgcggatgcggtttggcatcggcatgaacaccgatcacacgctggaagaagtcggacag
caatttagtgtgacgcgcgaacgtattcgccagatcgaagcaaaggcgctgcgcaagctg
aagcacccaagccggtcccggcgtttgcggtcattcttggatcaataa
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