Octadecabacter antarcticus: OAN307_c33460
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Entry
OAN307_c33460 CDS
T02538
Symbol
rne
Name
(GenBank) ribonulcease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oat
Octadecabacter antarcticus
Pathway
oat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OAN307_c33460 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oat03019
]
OAN307_c33460 (rne)
03009 Ribosome biogenesis [BR:
oat03009
]
OAN307_c33460 (rne)
Enzymes [BR:
oat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OAN307_c33460 (rne)
Messenger RNA biogenesis [BR:
oat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OAN307_c33460 (rne)
Ribosome biogenesis [BR:
oat03009
]
Prokaryotic type
rRNA processing factors
OAN307_c33460 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGI68854
UniProt:
M9R849
LinkDB
All DBs
Position
complement(3299811..3302612)
Genome browser
AA seq
933 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFID
YGGNRHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEAEKPKRTRRRRKP
RAAEVDGQDAVATADPVATTEDETSGDIAGMETIDLSDEGSSPMEIVADTPVDTPEQSAG
DSDDVADNDDRDGDDTDGDGGSDASAKDDSIESIADEDDYEDVRPVRKPRPKRYKIQEVI
KVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKA
IANDMSVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGNL
IKRSIRDLYSKDIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVTNYKEQMPLFARHQIESY
LSGMFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQL
RLRDLAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLRP
GMLESTTQPCSHCHGTGLLRSDDNVALGILRQLEEEGVRGRSKEVLIKAPIVIANFLMNQ
KREHIAQIETRYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVEIVSVISSDTAVMAEV
DDAPMEEVEIEVAATVETKNEGASTAPEQQEGEAPTKKRRRRRRRRRGGGDNVDANGDTT
AQNNGEAAAAVPSDTQTAVASTEQGDTPAADAVAAEDAPKPKRTRSRRKKAEALVQSAEV
TESVDAAVVGAVTDEAVTDDAPKPKRTRARRKKADDVVSGDAAAVQETAPVAEAAPSDAP
AEKPKRAPRNRKKPAAKAEVEVAVAETPAETVVEAPTETLETVAVDKPKRVRRTTSKPKV
EPEAAPTPEVAPVTEAPVADDAPKKRGWWSLGR
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgttgtggtggtt
gacggaaacaaggttgaggaattcgactttgaaacccaatcccgccgccagcttgctggc
aacatatacctcgcaaaagtaacacgggtagaaccgtcgctgcaggcggcgttcattgac
tatggcggcaatcgccatggtttcttggcgttcaacgaaatccaccccgattactaccag
attccggtggccgatcgtcttgcgctgattgcggaggaaaaagcctacgctgaaagccag
aaagccgaggccgaggccgaggctgagaagcccaaacgcacacgtcgtcgccgtaaacca
cgcgctgcagaggttgacgggcaggacgccgttgcaaccgctgatccagttgcgacgacc
gaggacgaaacgtccggcgatatcgcaggcatggaaacgattgatctgtcggacgaagga
tcgtcgccgatggaaattgtggctgacacacctgttgacacacctgaacaaagtgcgggc
gacagtgatgacgtggcggataacgatgacagggatggcgatgatacggatggcgacggt
ggcagcgatgcgtctgccaaagacgacagcatcgaaagtatcgcggacgaagacgactac
gaagatgtgcgtcctgttcgcaagccacgcccgaagcgttataaaattcaagaagttatc
aaagtccgccaaattctgctgatccaagtggtcaaagaagaacgcggcaacaagggtgcg
gccctgacgacttatctgtcgctggcgggtcgctactgtgtgctgatgccgaacaccgca
cgtggcggcggcatttcgcgcaagatcaccgttgctgcggatcgcaagaagctaaaagcg
attgccaatgatatgtccgtgcccgaaggcgccggcctgatcattcgcaccgcaggcagc
caacgcaccaagactgagatcaagcgcgattacgaatatctgcaacgcctgtgggaacaa
atccgcgaattgacgctgcgctcatccgctccggcgcagatctacgaagaaggcaacctg
atcaaacgctcgatccgcgatttgtattccaaagacatcgacgaagtgatcgttgagggc
gagggcggctaccgcactgccaaggacttcatgaaaatgatcatgccgtcccacgccaag
aacgtgacaaactacaaagaacagatgccgctgtttgcgcgtcaccagatcgaaagttat
ctgtccggcatgttcaatccgacggtgcaactgccgtccggcggctacatcgtgatcgac
acgacagaagcgctggttgcggtcgacgtgaactctggtcgcgctaccaaagaagggtca
atcgaacaaacggctaccaagaccaaccttgaggccgcggcagaagtggcgcgtcagctt
cgtttgcgtgatcttgcgggtctgattgtcatcgactttatcgatatggacgagcgtaag
aacaacgcgtccgttgaaaagctgatgaaggacaagctgaagaccgaccgcgcacgcatc
caagtgggtcgaatttctggtttcggcctgatggaaatgtcgcgtcagcgtctgcgtccg
ggcatgttggaatcgacgacccagccgtgttcccattgtcacggcacgggccttttgcgt
tctgacgataacgtcgctttgggcatcctgcgccagttggaagaagaaggcgtgcgcggc
cgttctaaagaagtcttgatcaaagcgccgatcgttattgccaacttcttgatgaaccaa
aagcgggaacacatcgcacagatcgaaacccgatacggcctgtctgtgcgcatagaatgt
gatccgcacctcgtgtcgccagattttgttcttgagaaattcaagaccgccagccgcgtc
gtagctgaggttgaaattgtgtctgtgatttcgtctgacactgctgtgatggccgaagtg
gacgatgccccgatggaagaggtggagatcgaagtggccgctacggttgagactaaaaat
gagggtgccagcaccgcgcctgaacagcaagaaggcgaagcacccaccaaaaagcgccgt
cgtcgccgtcgccgccgtcgcggtggtggtgacaacgtcgatgccaatggtgacaccacc
gcacagaacaatggcgaggcggcggctgccgtgccatcggacacgcagactgctgtcgca
tcgactgaacagggcgacacgccagccgctgatgccgttgcagctgaggatgcccccaag
cccaagcgcacacgcagccgtcgcaagaaagcggaggcgcttgtgcaaagtgctgaagtg
actgaaagcgttgatgcggccgtggttggggctgtcactgatgaggctgtgactgacgat
gcaccaaagcccaagcggacccgcgcccgccgcaagaaagccgatgatgtggtaagcggg
gacgcagcagcggtgcaggagactgcacccgttgcagaagctgcgccatctgatgcacct
gctgaaaagccgaaacgtgcgccgcgcaatcgtaaaaaacctgctgctaaggccgaagta
gaggtcgcagttgctgaaactccggcggaaaccgtggttgaggctcctactgaaactctg
gaaacggtggcggttgataagcccaagcgagtgcgtagaaccacatccaagccaaaagtt
gagcctgaggcggcgccaacaccagaagtggctcctgtgacagaagcgccagtcgctgat
gacgcacccaagaagcgcggatggtggtctttgggccgctaa
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