Octadecabacter antarcticus: OAN307_c44380
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Entry
OAN307_c44380 CDS
T02538
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oat
Octadecabacter antarcticus
Pathway
oat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OAN307_c44380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oat03021
]
OAN307_c44380 (rpoC)
03400 DNA repair and recombination proteins [BR:
oat03400
]
OAN307_c44380 (rpoC)
Enzymes [BR:
oat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OAN307_c44380 (rpoC)
Transcription machinery [BR:
oat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OAN307_c44380 (rpoC)
DNA repair and recombination proteins [BR:
oat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OAN307_c44380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Phage_DsbA
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AGI69804
UniProt:
M9RAY1
LinkDB
All DBs
Position
complement(4362163..4366416)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNQELTNNPFNPLTPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLQYGALMTEEEFLDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEGEADTLREDLKVATGELKPKKIIKRLKIVESFIESGNRPEWM
ILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LECRVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIEREGMKGEGMVFSNIEEVEHAL
QAGEVHLHAKIQARLPQIDTEGNEVFERFETTPGRVRLGALLPTNNKAPYSLVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWPLVEETRS
LVKDFEQQYMDGLITQGEKYNKVVDAWSKANDKVTEAMMTTISTTARNADGSESEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREVDCGTERAITAEAAVNDGEVVSSLSDRVLGRV
SADDVLKPGTEEVLVKAGELIDERSADIIETSGVAKMRIRSPLTCEAEDGVCAMCYGRDL
SRGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASVSGIVELRNEQ
ILENEMGEQVVMGRKMVLAIMDENGEERANHKVGYGSKVFVKAGSTITRGDKMFEWDPYT
LPIIAEKAGMVKFVDLINGIAIREDTDDATGMTQRIVTDWRSAPKGNELKPEIMILDSNG
EPVRNDAGNPVTYPMSVDAVLSIEDGQDIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESSEDADIKVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGENVDKAEFDEANAKSIARKGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVTRIAGERDNVVIQARRI
EAEAAAALAAPEPVSEDVIGGDVFDTIIVDTPESRDE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttacaaacaacccgtttaacccgctcacaccggctaaaacgttcgac
gaaatcaaggtgtctttggcatcgccagaacggatcctgtcgtggtcttttggtgagatc
aaaaagccggaaaccatcaactaccggacgttcaaaccagaacgcgacggccttttctgc
gcgcgtatttttggcccgatcaaagactacgaatgtctgtgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgagaaatgtggtgtggaagtcacgctgcaaaaggtgcgc
cgcgaacgcatgggccacattgaactggccgcgcctgttgcgcacatctggttcctcaag
tcgctgccaagccgcatcggcctgatgctggacatgactttgcgtgacctcgaacgcatc
ctgtatttcgaaaactacgtcgtgatcgaacccggcctgacggacctgcaatacggtgcc
ctaatgaccgaggaagaattcctcgacgcgcaggacgcttacggcatggacgcgttcacc
gccaacatcggcgctgaagcgatccgcgaaatgctggccgcgatcgatctcgaaggtgaa
gccgacacactgcgtgaagaccttaaggtcgccaccggtgaattgaagccgaaaaagatc
atcaagcgtttgaagatcgtcgaaagcttcatcgaatctggcaaccgtccggaatggatg
atcctgacggtcgttcccgtaattccacctgaactgcggccgctggtgccgctagatggt
ggccgttttgcgacgtccgacctcaacgatctgtatcgccgcgtgatcaatcgtaacaac
cgtttgaagcgtttgatcgaattgcgcgcacctgacatcatcgtgcgtaacgaaaagcgc
atgttgcaggaatctgtcgacgcattgttcgacaacggccgtcgtggccgcgtgatcacg
ggtgccaacaagcggccgctcaaatcgctgtcggacatgctgaaaggcaagcagggtcgc
ttccgtcaaaaccttttgggtaagcgcgtcgacttttccggtcgttcggtcattgtgacg
ggcccagaattgaaactgcaccagtgtggtttgccaaaaaagatggccttggaattgttc
aaaccgttcatctattcgcgtcttgaagccaaaggactgtcttcaacggtcaaacaagcc
aaaaagctggtcgaaaaagagcgtccggaagtctgggacatcttggatgaggttatccgc
gaacaccctgtcatgctgaaccgtgcgccaacgctgcaccgtcttggcattcaggcgttc
gaacctgtcttgattgaaggaaaagccatccagctgcacccactcgtgtgttctgcgttt
aacgccgacttcgacggtgaccaaatggctgtccacgtgccactttcgcttgaggcgcag
ttggaatgtcgcgttctgatgatgtccaccaacaacgtgctgtcgcctgccaacggcgcg
ccaatcatcgtgccgtcccaagatatgatccttggtctgtattacacgacgattgaacgc
gaaggtatgaagggcgaaggcatggtcttctccaacatcgaagaagtcgagcatgctctg
caggctggtgaagttcacctgcacgccaaaattcaagcgcgacttccccagatcgatacc
gaaggcaacgaagtgtttgaacgctttgaaaccactccgggtcgtgtccgtcttggcgcg
cttttgccaacgaacaacaaggcaccgtacagccttgtgaaccgtcttttgcgtaagaag
gaagttcagcagatcatcgacacggtctatcggtattgcggacaaaaagagtccgttatc
ttttgtgaccagatcatgacgatgggctttcgcgaagcgttcaaagctggcatttcgttt
ggtaaagacgacatggtcatccctgacaccaaatggccactggttgaagaaacccgttcc
ttggtgaaggattttgaacaacaatacatggacggcctgatcactcagggtgaaaagtac
aacaaagttgtggatgcgtggtccaaggccaacgacaaggtcacagaggcgatgatgaca
acgatttcgaccacggcgcgcaacgctgacgggtccgaatccgagccaaattcagtttat
atgatggcccactccggtgcgcgtggttctgtgacgcagatgaaacagctgggcggcatg
cgcggtctgatggccaagccaaatggcgaaatcatcgaaacgccgatcatctcgaacttc
aaagaaggcctgacggttctggaatacttcaactcgacccacggtgcccgtaagggtctg
tcggacactgcgttgaagactgcgaactccggttacctgacacgtcgtctggttgacgtt
gcccaagactgtatcgtccgcgaagttgattgcggaaccgaacgtgcgatcacagcagaa
gccgcagtgaacgacggtgaagttgtatcgtcgttgtccgatcgcgtgcttggtcgtgtc
tctgctgatgacgttctcaagccaggtacagaagaagttctggtgaaagcaggagagctg
atcgacgaacgctctgccgatatcatcgaaacgtctggtgtcgccaagatgcgcatccgt
agcccgttgacgtgtgaggccgaagacggcgtctgcgccatgtgttacggtcgtgacctg
tcgcgcggtacccgtgtgaacataggcgaagctgtcggcatcattgctgcgcagtctatc
ggtgaacctggtacacagctgacgatgcggacgtttcacatcggcggcgttgcccaaggt
ggtcagcagtcgttccttgaagcatccgtgagcggtatcgtggagctgcgcaatgagcag
atcctcgaaaacgagatgggtgagcaggtcgttatggggcggaaaatggtcctcgcgatt
atggacgagaacggtgaagaacgtgcaaaccacaaggttggttacggttccaaggtgttt
gtcaaagccggatccacgattacccgtggtgacaagatgttcgaatgggatccctacact
ctgccgatcatcgcagagaaggcgggtatggttaagtttgtcgacctcatcaacggtatc
gcaattcgcgaagacacggatgatgcgacaggtatgacccagcgtatcgtaaccgattgg
cgttccgcgccaaaaggcaacgagctgaagcctgaaattatgatcctagactcgaatggc
gaacctgttcgtaacgatgcgggcaatcctgtaacctacccgatgtccgtcgacgcggtt
ctgtccatcgaagacggtcaggacatccaagccggtgacgttgttgcgcgtattccgcgt
gaaggcgccaagaccaaggacattacaggtggtcttccacgtgtggctgaattgtttgag
gcacgacgccccaaagatcacgccatcatcgcggaaatcgacggctatgttcgtttcggc
aaggactacaaaaacaagcgccgtatcgcgattgagtcctcggaagatgcggatatcaaa
gttgaatacatggtgccaaagggcaaacacatccccgtgcaggagggcgacttcgtgcaa
aagggcgactacatcatggacggcaatccagcgccgcatgatatcctcgccatcatgggt
gtcgaagcgcttgcggattacatgatcgacgaagttcaggacgtctatcgtttgcaaggt
gtgaagatcaacgacaagcacatcgaagtaatcgtgcgtcagatgctccagaaatgggaa
atctccgacagcggtgacacgacattgctcaagggtgaaaatgtcgacaaggccgagttt
gacgaggcgaacgccaaatcaatcgcccgtaagggtcgccctgcgcagggtgagccgatc
ttgcttggtatcaccaaggcgtcgttgcaaacgcgttcgttcatctctgcggcgtcattt
caggaaaccacgcgcgttcttacggaagcatccgtgcagggcaagcgggacaaactggtc
ggtctcaaagagaatgtcatcgtaggtcgcttgatcccggccggtactggtggggccacg
cagcgcgtcacccgcatcgcgggcgaacgtgacaacgtggttattcaggcccgtcgcata
gaggcagaggcagccgccgctttggcagctcctgagcctgtttccgaggacgtaatcggt
ggcgacgtattcgacacgatcatcgtggacacaccggaaagtcgtgacgagtaa
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integrated database retrieval system
