Oreochromis aureus (blue tilapia): 116309275
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Entry
116309275 CDS
T07295
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116309275 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oau03041
]
116309275 (ddx42)
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116309275 (ddx42)
Spliceosome [BR:
oau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116309275 (ddx42)
Complex B
116309275 (ddx42)
Complex C
U2 SnRNP specific factors
116309275 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
116309275
NCBI-ProteinID:
XP_031581700
Ensembl:
ENSOABG00000021236
LinkDB
All DBs
Position
LG4:complement(6837896..6846444)
Genome browser
AA seq
909 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPHLTQESHTSFGGPGSGSGGYGKSQQLPSFYKI
GTKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAE
VENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENID
YDSDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYEEHEELSSLTGTQVLELRHKLNL
RVSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGS
GKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLVSG
SDKWGWLTRRLVEFTSTGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVI
SDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTNKDTSFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGAESSERSSTSSLLSSTSSYEGYSKPTTGAMGDRMSAMKQAFQAQYKSHFVAASS
GPPKLSAKSSGSSGWTSAGSLSSVPTESANGSERSHSATLSMVGFTSAGSLSSVAPTSQT
SSHHSYTPPAPPSQRESSRDRHGDDRGRHGDSQHRHSDRNDRYSSEDRYGDRDRHGDRDR
DRDRHGDRDRHSSSRHSDSRNGDGSKRDRDDRRSDRDGGDRGSGDGRDRGSDSFAVPEPP
KRRKSRWDN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtcctggtgtgaagcgaggttttggctttgggggattttca
ctcgcaggaaaaaaagaagagcctcaccttactcaggaatcacacacatcatttggaggc
ccaggatctggaagtggtggatatgggaagagccagcagctcccatcattctacaaaata
gggaccaaaagagctaattttgatgaggaaaatgcatattttgaagatgatgaagaggag
tccagcagtaatgtggatctgccttacatcccagctgaaaactcacccacacggcaacag
atgcagtcaggtggtggctcagacagcgaagatgaccctttggatgctttcatggctgaa
gttgagaaccaagcagctaaagacatgaagaaactagaggaaaaggagaaggagaaaaag
tcagccaagggtattcgtgatgacattgaagaagaagatgagcaagaagcttacttccgc
tacatggcagagaatcccaccgccgggctgacacaggaagaagaggaggaaaacattgat
tatgacagtgatgggaatccaattccctctacaaccaagaaaatcatcatgccacttcct
cctattgaccactcagagattgattatccaccctttgagaaaaacttttacgaagagcac
gaggaactcagcagcttgactggaactcaggtgctggagttgaggcataaactgaactta
cgagtatctggtgcggcccctccaaaaccttgtaccagctttgcccactttaacttcgat
gagcaactaatgcaccaaattcggaagtctgaatatactcagcccacaccgattcagtgt
cagggtgtccccattgcgctgtcaggacgtgatatgataggcattgcaaaaacgggcagc
ggcaaaactgcagcttttatctggccaatgctggttcatatcatggaccaaaaggaactg
gagcctggggaaggacccatcgcagtcattgtgtgccctaccagagagctttgtcagcag
atccatgcagaatgtaagcgctttgggaaagcctactcattgcgttcagtggctgtatat
ggaggaggcagcatgtgggagcaagccaaggctttgcaggagggtgcagagattgtggtg
tgcactccaggtcgtctgatagaccacgttaaaaagaaggccacgtctctgcagagagta
acatacctggtgtttgatgaggctgatcgaatgtttgatatgggctttgaatatcaggtt
agatccattgccagccacgttcgcccagacagacagactcttctgtttagtgctacattt
cggaagaagatagaacggcttgctagagacattttggttgatcccattcgtgtcgtgcag
ggagacatcggagaggccaatgaggatgtgactcaggtagtggagatgctggtcagtggg
tcagataaatggggctggctgactcgccggctggtcgaattcacctccacaggatcggtc
ctcatttttgtcaccaagaaggccaactgtgaggagctagctactaacctgaatcaagag
ggctacagcctgggcctcctgcatggtgatatggaccagagtgagaggaacaaggtcatc
agtgatttcaagaagaagaacttgcccgttctggtggccactgatgtagctgctcgtggt
ctggacatcccgtccattcgcacagtggtgaactacgacgttgcacgagacatcgacaca
cacacccacaggatcggtagaacgggtcgtgctggagagaaaggtgtggcctacactctc
ctcaccaataaagacacatcatttgctggggacttggtgcggaatctggagggagcaaat
caggctgtttccaaagagctgatggacttggccatgcagaatccctggttcaggaagtca
cgattcaagggtggcaaaggaaagaaactgaacattggtggaggtggtcttggttacaga
gagagacccggccttggggctgaaagttctgaacgtagcagcaccagtagcttgttgtct
tccactagtagctatgaaggctacagcaaaccaactactggggcaatgggggatcgcatg
tctgcaatgaaacaagccttccaggctcagtataagagccactttgtagctgcatccagc
ggccccccaaagctcagtgccaagtctagtggctcctcaggatggaccagtgccggcagc
ctgagctctgtgccaacagagtctgccaatggctcagaacggtctcacagtgctaccttg
tccatggtgggtttcaccagtgctggctccctgagctcagtggcccccaccagtcaaacc
agttcacaccacagctacactccccctgcacctccgtcacagagagagagctcacgtgat
agacacggggacgaccgggggcgtcatggtgacagtcaacaccgccatagcgacaggaac
gatcgatacagtagcgaggatcgctacggagaccgggatcgtcacggggatagagataga
gatcgtgaccgccacggcgaccgtgatcgccacagcagcagccgccacagtgacagtcgt
aacggagatggaagcaagagggacagagatgatcggaggagtgatagggatgggggagac
agggggagtggagatgggagggacagaggaagcgatagctttgctgtccctgaaccacct
aaacgtagaaagagcagatgggacaactaa
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integrated database retrieval system
