Oreochromis aureus (blue tilapia): 116309538
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Entry
116309538 CDS
T07295
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116309538 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116309538 (hbs1l)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116309538 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
116309538
NCBI-ProteinID:
XP_031582031
Ensembl:
ENSOABG00000011529
LinkDB
All DBs
Position
LG15:8324703..8349993
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AA seq
689 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCCISPATANQFIYSRQEERHAPREEPLEEE
EFEDEAVPVSPTVNHNLSPLDQAKLYSCLDHMRTVLGDAVPDSVLTQAAIKCGFDPQRAL
DAVLSEDTKTAPVTRSTAEEIGTVERANQDKAPQPQRTKQEAVADKAKSRDASHNKLDSE
VLPKVARMTVSGKKQTMGFDVRSTGENGVVVTATEAASKRPETPSKGSNGDEPVTGPTPS
RSSGKARQAINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKY
EQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNM
ITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQ
ERFQEIISKLGHFLKQAGFKESDVFYIPTSGLSGENLATRSSVSQLTSWYSGLSLLEQID
AFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRILAMPPNETCTVKGIT
LHDEALDWAAAGDHVSLTLTGMDIIKINMGCVFCDPKEPIRVCTRFRARVLIFNIEIPIT
QGFPVLLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAIVEIQTQRPVSLEL
YKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcatagaaatgttcgaggttacaactacgatgaagactttgaagatgatgac
atgtatggacagtctgtggaggatgactactgttgcatttcaccagcaacagcaaatcag
ttcatctactcgcgtcaagaagaaagacatgcaccaagggaagagcctttagaggaggaa
gaatttgaagatgaggctgtccctgtgtcccctactgtcaaccacaacctcagccctctt
gatcaagccaagctgtattcctgtctggaccacatgcggactgtgctgggagatgcagtg
ccggactcagtcctgacccaagcagccataaaatgtggatttgacccacagagggcactg
gacgcagtactgtctgaagacactaaaaccgctccagttaccagaagtacagctgaagag
attggtacagtagagcgagctaaccaggacaaagcgccacaaccacaaagaaccaaacaa
gaggctgtggctgacaaagctaaaagcagagatgcttctcacaataaactggactctgaa
gttttacccaaagtggcccgcatgaccgtctctggaaagaagcagactatgggttttgat
gttcgaagcacaggggagaacggtgttgtcgtcacagctacagaagctgcctccaaacgc
cccgagactccatctaaagggtccaacggggacgagcccgtcaccggtcccaccccgagc
cgttcatctgggaaggcacggcaggccatcaatatcaaagctgagctggagaagcgacaa
gggggcaagcctctgttaaatttggtagttataggtcacgtggatgcgggtaagagcaca
ctgatgggccacctgctatatctgctcggcaatgtcaacaaacgcaccatgcataagtac
gagcaggagtcgaaaaaggcaggaaaagcctccttcgcctatgcttgggttctggatgaa
acgggcgaggagagagacagaggtgttacaatggatgtgggcatgacaaagtttgagaca
aactctaaagtggtgacactgatggatgcaccaggacacaaagacttcatccccaacatg
atcacaggagctgcacaggctgatgtggcggtgctcgtggtggatgccagcagaggagag
tttgaggcaggcttcgaggcaggcggtcagaccagagagcatgccttgctggtgcgttcg
ctgggtgtcactcagctggctgtagctgtcaacaagatggaccaggtaaactggcaacag
gagcgtttccaagaaatcatctcgaaacttggccattttctcaagcaggcaggattcaag
gagtctgatgttttctacatccccaccagcggcctgtcaggagaaaaccttgccaccagg
agctcagtgtcacagctcacctcttggtactctgggctgagcctgctggagcagattgat
gctttcaaggcccctcagaggtctgtagacaaacctttcagattgtgtgtctccgatgtc
tttaaagaccagggttcaggcttctgtgttacaggaaagatcgaggctggttatattcaa
actggagacagaatactggcaatgcctccaaatgaaacctgcactgtcaaaggaattact
ctacacgatgaggctctggactgggctgcagcaggagaccacgtcagcctgacactcact
ggcatggacatcattaagatcaatatgggctgtgtgttctgtgatcccaaagaacctatt
cgagtttgcactcgattcagagctcgagtcctcattttcaatatcgagatccccatcaca
caaggcttcccagtactgttgcactaccagacagtcagcgaaccggccaccataaggaag
ttaattagtgttctacacaagagcagcggcgaggtcctgaagaagaaaccaaagtgtttg
agtaagggtatgaatgccatcgtggagatccagacccagaggcccgtgtcattagagctg
tacaaagactataaggagctgggccgcttcatgctgcgatatgttggctccaccatcgcc
gcgggggttgtcactgagatcaaagaatga
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