Oreochromis aureus (blue tilapia): 116309983
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Entry
116309983 CDS
T07295
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116309983 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116309983 (pcf11)
03019 Messenger RNA biogenesis [BR:
oau03019
]
116309983 (pcf11)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116309983 (pcf11)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116309983 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
116309983
NCBI-ProteinID:
XP_031582560
Ensembl:
ENSOABG00000013194
LinkDB
All DBs
Position
LG10:34716529..34728013
Genome browser
AA seq
1586 aa
AA seq
DB search
MDCLLISGYGFGKTRLGLAECLSSKMDDSAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENINFAKDIVEIIEAQISKAPPSEKLPVLYLVDSIVKNVGGEYLAVFAKNLIPSFICV
FEKVDENTRKSLFKLRSTWDDVFPPKKLYALDVKVNSVDPAWPIKPLPPTINASIHVNPK
FLKQPEESSSSPRPTPAQPPPTPPPAPQPVPAAISQSSLTQEQLIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLASGFTLPAATAVSTSSAASLAPKLISQPAPVVRPWVPSQSDSKAS
VRDPRLNRPPTGPPPLDQPATTKREPPPTTGSHSLALEKARMQKKDAPQEKPKSKSPSPM
AKSGPSKTKAAEAVLQSKDGTKKDPRLRKRTQDKLGEGKDSEQKEKKRCSDEKEREDAAR
GAEPQRFKGKLVNGSVAKHERDKASDKTAGNARTHARKRTRSRSRSRSPAGSPKRKDRRS
PKGRARSSSPSPLHKAGKPRRLELLHGKPSREDRPTPKNQSESRRSKRPGEERHSETRDS
HSPRSHEGGCKEVKDAPHRWRSGWEESKHMKLSDDMHAKPTPQRHKLYSTPNRPSIPRTP
KHRLSVDANLQIPDVLNSASKKDLLRRASKRMESGEISREEFLNMAHQIKQLYQYQEEIQ
QRKDSWDESDFPVKKQPPLLSTPSSQPRPHEGMDAAELSYYEHKSKLRKTQVNHRPAGEE
WEGEENPETSDKPGHSEKMGGGQSAGHPPPHKYNRAPRDRPGERRSKECEEQRAPLAPMV
EEYNHGKEFPALKPGLRFMKRDHRETKRSEVRFWSSRVSGCRSGILQQGEREWTSPLTER
HHYNDREEQKSSYNVPRRYGPPADPRRPEVPPPSGTVVHRNSPSPAGLDATATRFERERL
SPLQKDSADMSPIPRFESPNSEHSDDGPLDAPPPHASTKSILKAPHARGVPQSSVRQHSG
SPGHTPPHDGGHPPARYNGPGHMGSSRPHPPGWYEGGGGPGRFDDSLQCEGPHHPAPGRF
EGAGPPHQTMAERVDGPGHMSHGPMRGGERMGRFEGPPQVPGRFGAPVGLQTRFEVPGPG
HSEGPLQRFEAPRHLNNMGPGPGSAPMGFQQRPARFEGPMRIDGTGHFEGPGQPGPRYDV
PHQGGPPRFEHFPGQGHLRFEPQHNLQPLMRQMGPPMYESPMAPQQNFHMPPQRFPDPIN
PQFPAAPAGFPAQQNMQQAGNFHAQPFSQPGPTPFYNPAAPAIGLQQPVSVMGTMAQPFL
PQTAVPFGQQNPQVVPAENHLGQVDVNDLLSKLLSTGIIKPSQPDATPASSSESSSAPPP
ALPPEEEEEEEQEVEGEGEDDVPDLTSFSIDDMKQRYESVVTKLYSGNQCCLCSMRFTAT
QTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKEN
EEEVQKSQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEEEDWFLKNAIKVDDKN
FHPSCFEDYKNTSSYVDVTPSPSKLLTDHPLGAFVKTEEKQEEVASCAVAAAAAAAATTS
VKQEVQSESGEPPEVKTEAGEEAAAP
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtttcggtaagactcgcttaggtttggccgag
tgtctcagctcaaagatggacgacagcgcggcgagggaagacgcctgccgggagtaccag
tcctccctcgaagacctgacgtttaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacatcaacttcgccaaggatatcgtggaaattattgaagcacaaataagc
aaggccccacccagcgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcccttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagtccctgttcaagctgcgttccacctgggac
gacgtgttcccgcccaagaagctgtacgcgctcgacgtgaaggtcaactctgtggacccg
gcgtggcccatcaagccgctgccgcccaccatcaacgccagcatccacgtcaaccccaag
ttcctcaaacagcctgaggagtcttcatcttctcccaggccgaccccggcccagccgccg
cccacgcccccacccgcccctcagccggtccccgcagccatcagtcagtccagcctgacg
caggagcagctgatccggcagcagctgctggccaaacagaagcagctcctggagctccag
cagaagaagatcgagctggagctggagcagacaaaagctcagctggccagcggcttcaca
ttaccagcagcgacggcggtctccacttcatcagcagcaagcctggcgcccaagctcatc
agccaacccgctcccgtggtccgaccctgggtaccctctcagagtgattccaaggcgtcc
gtcagagacccccggctgaatcgcccgcccactggccccccacctctagaccagcccgcc
acaacaaaaagagagcctccacccaccacaggaagccactctctcgctctggagaaagcc
aggatgcagaagaaagatgctccacaagagaaacccaaatccaagtcaccgtctccaatg
gcgaagagcgggccgagtaaaacgaaagcagcagaggcggtgcttcagagcaaagatggc
acgaagaaagacccgcggctgaggaaacgcacgcaggacaagttgggcgagggcaaggac
agcgagcaaaaagagaagaagcgatgcagtgatgagaaggagcgggaggatgctgcacgg
ggggcagagcctcagaggttcaaaggtaaactggtgaacggttcggtcgccaaacatgag
cgtgacaaggcctctgataagaccgccggcaacgcccgaacgcacgcaaggaagcgcact
cgctcacggtccaggtcgcgatcacctgccggctccccaaagaggaaggacaggcgctcg
ccaaagggtagagcccgcagcagctcaccatcacctttgcataaagctggaaaaccacgg
aggcttgaactcctgcacggcaagcccagtcgggaggaccgtcccactcccaaaaaccaa
tcagagagcaggaggtccaagagacccggggaggaacgccactctgagaccagagactct
cactcgccacgcagccacgagggaggctgcaaggaggtgaaggacgcacctcaccgctgg
aggagcggctgggaggagagtaaacacatgaagctgtcggacgacatgcacgccaagccc
acgcctcagagacataaactgtacagcacgccgaaccgccccagcatcccccgaaccccg
aagcaccggctcagtgtcgacgccaacctgcagatccccgatgtcctgaactccgcctcc
aagaaggacctgctgaggagggcgagcaagcgcatggagagtggcgagatctcccgcgag
gagttcctcaacatggctcaccagatcaaacagctgtaccagtatcaggaggagatccag
cagcgcaaagacagctgggacgaatcagacttccccgtcaagaagcagccaccgctgctg
agcactccctcatctcagccccgcccccacgaaggcatggacgcggcagagctgtcgtac
tacgagcacaagtcgaagctgaggaagactcaggtcaaccaccgacctgccggagaggag
tgggagggggaggagaatccggaaaccagtgacaaaccggggcacagcgagaagatgggt
ggtggtcagagcgccggacacccgccgccacataaatacaaccgagccccgcgagacagg
ccaggcgagaggcggagcaaagagtgtgaggagcaacgggcgccgctcgcccctatggtc
gaagagtacaaccacggcaaagagttcccagcgctgaagccgggtcttcgcttcatgaag
agagaccacagagagacaaagaggtcagaggtcaggttctggagcagcagggtgtcaggg
tgtcgatcagggatacttcagcagggtgagagagaatggacctcaccgctgaccgagcgc
caccattacaacgaccgcgaggagcagaagagcagctacaatgttccacggcggtacggc
ccacctgctgacccccgcaggccggaggtgccccctccctcgggcaccgtggtccacagg
aactccccgagcccagctggcctggacgccacggcgacacgctttgagcgcgaacggctg
tcaccgttacagaaggactctgctgacatgagcccgataccgcgctttgagagcccaaac
agtgagcactcggacgacgggcccctggatgccccgcctcctcacgcttcaaccaaatcc
atcctgaaggcgccacacgcccgcggagtgccgcaatcttctgtccgacagcacagcggg
tcacccggacacacgccacctcacgacggcggacatccccctgcacgctacaacggtccc
ggtcatatgggctcctctaggccccaccccccaggatggtatgaaggcggcggtggcccc
ggacggttcgatgactcactgcagtgtgaggggcctcaccacccagcccccggcaggttc
gagggcgccggaccaccccatcagaccatggcggagcgggtggacggtcccggacacatg
agtcacggtccgatgagaggcggagaacgaatggggcggtttgagggcccccctcaggtc
cctggaaggtttggggctcctgtcggactacagacacgatttgaggtgccggggccgggc
cactcggagggcccgctgcagcgcttcgaagcaccacgtcacttaaacaacatgggtccc
ggccctggatccgcccccatgggcttccagcagcgacccgcccgcttcgagggccccatg
aggattgacggcaccggacacttcgaggggccgggccagccggggccccggtatgacgtg
ccgcatcagggaggcccaccgcgcttcgagcacttccccggacagggccacctgcgattc
gaacctcaacacaacctgcagcccctcatgaggcagatgggcccgcccatgtatgaaagc
cccatggccccgcagcagaacttccacatgccaccccagcgtttcccggaccccatcaat
cctcagttccctgcggcaccagcggggttcccggcgcaacagaacatgcagcaggccgga
aacttccatgcgcagccgttcagtcagccaggacccacccccttctacaaccctgcagca
cccgccattggcttacagcagccggtgagcgtgatgggaaccatggcccagcccttccta
cctcagaccgccgtgcctttcggacagcagaatccgcaggtcgtccctgcggagaaccat
ttgggtcaggtggacgtgaacgacctgctgtccaagctcctctccactggcatcatcaaa
ccctcgcagcccgatgccacgcccgcctccagcagcgaatcgtcttctgcgcctccgccg
gcactgccaccagaggaggaggaagaggaggagcaggaggtggagggtgagggcgaggac
gacgtgccggacctcaccagcttcagcatcgatgacatgaaacagcgctacgagagcgtg
gtgacgaagctgtactcagggaaccagtgctgcctgtgcagcatgcgcttcactgccacc
cagaccgacatgtacgccgaccacctggactggcacttcaggcagaaccatgccggcaag
gtggcgagcaagaaggtcacacaccgccgctggtactacagccttacggactggatcgag
ttcgaggagatcgcagacctggaggagcgcgccaagagccagttcttcgagaaggagaac
gaggaggaggtgcagaagagccaggcggccgccaaggagaaggagttccagagcgtgaga
gccaccaaggaccaggtgggagagagctgtgagatctgtcaggagccctttgagacgtac
tgggtggaggaggaggaggactggttcctgaagaacgccatcaaggttgatgacaagaac
ttccacccctcctgcttcgaggattacaagaacacatcctcgtatgtcgacgtcacgccg
tcgcccagtaagctgctgaccgatcacccgctgggcgcctttgtgaagacagaagaaaag
caggaggaggtcgcttcctgtgctgtcgctgccgctgctgctgctgccgccaccacctca
gtgaaacaggaggtgcagagtgagagcggggagcctcctgaagtgaagacggaggcaggt
gaggaggcggcggccccgtga
DBGET
integrated database retrieval system
