Oreochromis aureus (blue tilapia): 116311872
Help
Entry
116311872 CDS
T07295
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oau04131
]
116311872 (vps13a)
Membrane trafficking [BR:
oau04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
116311872 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
116311872
NCBI-ProteinID:
XP_031584948
Ensembl:
ENSOABG00000019411
LinkDB
All DBs
Position
LG12:complement(18468513..18513843)
Genome browser
AA seq
3294 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLNNLEIKENALSQLDIPFKVKAG
HIGRLQLKIPWKYLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEQ
TKLKAAEQENPKLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDHVTNPNCPLSFGVSLK
NLSLQTADEKWRPSLLDENSKFFFKLVQLDNLFAYWNVNSVLFSSHTSDRALQHLQSSME
VRSSHDFIFRPISADAKLRMNPRSDVDFSSPKMDLMVNLREVAIELNKAQYISILELLCS
VDMMSRNLPYRKYRPEVHVHKNAKTWWKYVITGVLEIDVKPGLHMWSWQHIRRHRQMVKN
YRELYKIKITSKKPSDELLKKLEKPEKTLDIFNITLARQQAEVEASKAGLRIYRPGMKME
EEESQGWISWMWNWGAQPDTERKEVKTGGFDELLTPAEKAKLYTAIGYSETAANPNLPKD
FENMKVNFHMEKLSMSIKDDKDKNEIIRLTVGELYSTLTQRPGAQAIKITAKLTLFEVTG
LANKQPPPTLLSSSKAAIGAGTPLLSILFETNPLDESANQRLHVESQPLEIIYDAITVNS
ISAFFRPPDDMQLDELTNATLMKLEQFRDRTATGLLYVIETQKVLDLKVNLMASYVIIPQ
TGFYNGTQNILLLDLGHFKMSSQSRKHLPQLCVSSSNIEDIMSRAYDSFDVQLESLQFLY
SKPDGNWKKARKQKRSPLHILEPVDLKVVFSRAMVNKDSRMPKYKMSGELPLLSLRISDV
KLRSVLELMDSIPLPESKPAARGNAPSSTPKPRQSFTPHLTPRKPLNFDQRSSLIFESCE
TISITSLGSEEDLFYDAPSSPIGDKPFFPDNPMPLRYVDASKRKSLIKEDAQKNMTDFFM
TFEISEFSVQLCRLSGNMEVTVLHLDIEGLGTELKLRTFDMTSNTYLREICLKCPEYMDS
EDKQVQLITTLDNKEVDLLTLEYIKADKNGPDFKSQYNNTEQLIKVTFSSLDVHLHTEAL
LNTMNFLSKLLPESNKKEGQQEELPTIPEEDDAEAEKEGEKKEETAVTKKKPSKRSKFAD
VVNLHIKTDLRCLKVFIRGQKARISEISIEGLVSEVLMRKKGMEVSAKLKNIVILDCNKE
AFYKKAVSIADKEVFHFHMVNYTDATEGDAYLDMSNVDTTVTLSVGCIQVIFLNKFLSSI
LEFVNNFQEAKEALTEVTVQAAEKAASGVKELAERTTRIALDVHFNAPVIFLPQSSSSSN
VIVADLGLLSIKNRFAKQPCKSDASIPPVVDIMTVRLTDLKMYRVKCKNERFEEEIQLLK
PVSLDLEIRRNLSSSWYHEIPDIAIEVHLKPMSLLLCQNDMIIVLRTLNENLSEKSDAGP
PPAALPATDPSSDSVSNKDSQESGATGPPSSNTVVTAAVVETQKNSKLKKNTLKLNFKFD
SLTVVLYSSNEDKQLEPQRDQSHQQHERSDPQHERSDPHDEQLKLAEFTLGTISTSVHMY
SDSSMMASVELAECLLDDKRPKAKSITSRMMAMCPGAEQNNMVEVSYRQTRESTTLDTVV
QDVYLCASMEFLLTVADIFLKATQQGFAQVPQPKNSAGPGDKKNINSSVTSKESATAPAT
VTKTEMKVLVRNPEIVFVADLTRDDAPALVMTTYCELKMENGAEGSQMTAVIKDLKVVAC
PFLRQKRKNNVTTVLQPCHVVFKSTQSPTSPQDMEVTINALSLKVSPVIINTVITIQSAL
TPTAETPEKLDSPVPVNLWDKQSWKELKLWFLEEEDDEDTRSVTRLIPQGESLKVNINSI
CVTLEAGVGHRTIPMLLAKSSFKGDVKNWSTLINLYSQLTLEVHYYNEVMGVWEPLLEPL
EDETRDGFRPWVLELKMKKKPVKYTSMSDEVDSNIPDYKTVIAICSKDQLNITLSKCGLA
MLSNLGTAFAEAAKQTAECFQKDEAPFVVKNRLGLPVSVRHSEMFCPVGQQSIANTVKLQ
NGESLGMDYSTTTDTDHFSAMTSLSGKDYYIQPTPDGHTSASVIPLIKVGRGMYSVMHNN
SGVTRFLVCQISSVEGSKYIKIRSPFQLINHFSIPFNVFEGSTLLGTALPAEEFCVPLDS
YRSELSLQPVIESTDDRQGEQYDCSEGFSYEDVKNLEPEKRLQQICRRRGNQGGVMTINI
VPLKDAVTCKETGDVGENFDVPFVLHLWPSILLRNLLPYTITYSLKNSGVSAPEATLDPG
HSAQLHTAVINQSSLDLRLIEYLAQDWSSVYRLNSDQEEITFIVFQSLREDEDEDGDAVE
RKRAELDIAVHVKYDLGQMVVAIHSPYWMINKTGRLLQYKADDIHRKHPMDYKMPLLFSF
KPRYFLRNNKVRLMISESELSDEFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRI
VTFVPFYMLVNRTKHSVFICEEGQETWTEAKPEQSAIPFWPESDTKKLKIKVEASLSPPV
TIDFKRPENCLLLHLDNKVGGIIVDMNLSEHSATIQFSDYHDGAAPFLIINHTKNQTLQF
HQSVRTESSRVADEILDLSFSVEEDSSQKKAEHEELEAGKAVYYTWTEPTGSRALSWKCS
TYNGTLKSEEDLREDVNKEGKLFVISFYEGLQRVVLFTEERRVFKMLCDNERVQLAQQEI
VLALRHVGLSLVNNSTSQEVAFIGITSSDVVWEFKPKKKSRWKPLSIKEAEVMEDKFKDY
LESGAVDKEIFDLENGFQVCFNPTGQDMQLMKPCDAPLRRHFLPGVKVEYSISPRQSTYR
IQVHRIQIQNQLPGAIFPYVFYPVKLPKSVAMETEPKPLTDISIITRAAGHSDISRIKYF
MVLIQEMDLKLDLGFLYAILDLFSPENDSITSAEQEVELFEKDITNIKTELNHVSAADKS
PISLYEYFHISPIKLHLSFSLSTGGEDGLKEKRDSELIPVQSLNLLLKSIGATLTDVQDV
VFKLAFFELNYQFYTTQQLQSEVLRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVE
AFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEY
QQKRRETMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKG
LVGAVARPTGGIIDMASSTFQGIKRAAETSQDIQSLRPPRFIHEDGVIRPYKEREGLGSQ
MLQKIENGRFASYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKDP
TIIEDRRLRIEAKERVKSVFHAKEFGKIINFKTPEIAKWVLAKLEDARESLPKY
NT seq
9885 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggttgtagatgtcctcaaccgatttttaggggactacgttgtc
aaccttgacagctcgcagctaaagctcggcatatggggaggtgatgctgtccttaataat
cttgaaataaaggaaaatgccttgagccaacttgatattccttttaaagtgaaggctggt
catatagggcgtctccagctgaagataccatggaagtacctctacacacaatccgtggag
gccacgttggatggtgtctacctgcttatagttcccacagcaagtataaagtatgatgcg
gaaaaggaggagaagcagcttcaggaggctcgccagagggaactacagcggatagagcag
acaaagctgaaggctgctgagcaagagaatcccaaacttgagaaacaggacacttttgtg
gaaaagcttgtcactcaggtcattaaaaacctgcaagtcaagatctctaacatccacgtg
cgctatgaagatcatgtaacaaatccaaactgccctttgtcatttggagtgtcactgaaa
aacctcagccttcagaccgctgacgagaagtggagacccagtcttttagatgagaattcc
aagtttttctttaagctggtacaactagataacttgtttgcctactggaatgttaactca
gtacttttctccagtcacacttcagatcgggccctgcaacatctccagagcagcatggaa
gtccgatcctctcatgacttcatttttcgccccatttcagctgatgcaaaactgcggatg
aatcccaggtcagatgtggatttctcctcccctaaaatggacctgatggtcaacctcaga
gaggtggcgattgaactcaacaaagcccagtacattagcatcttggagctgctgtgctca
gtggatatgatgtcacgtaatctgccatacaggaagtacagacctgaggtccatgttcac
aagaacgccaaaacatggtggaagtatgtgatcacaggcgtcttggagatagatgtgaag
ccaggtctccacatgtggtcatggcaacacattcgccggcaccggcagatggtaaaaaac
tacagagagctctacaagataaagatcaccagcaagaaacccagcgatgagcttctcaaa
aaattagagaagcccgagaagactttggatatttttaacatcactttggccagacagcag
gctgaagtggaggcaagtaaagcaggcctgcgtatttaccgtcctgggatgaagatggag
gaagaagagtctcagggttggatcagctggatgtggaactggggagcacagcctgataca
gaaagaaaagaagttaagactggagggtttgatgagctgttaacccctgctgagaaagcc
aaactctacactgccattggatacagcgagactgctgctaatcccaacctgccaaaggat
tttgagaacatgaaggtcaacttccacatggagaagctgtccatgtcaattaaagatgac
aaggacaaaaacgagatcatcaggctgactgtgggagagctgtactccacactcacacag
agacctggagcacaagccatcaaaatcacagccaagcttactttgtttgaggtcactggc
ctcgccaataagcaacctccaccaactctcctttcatcaagtaaggcagccataggagca
gggaccccactgcttagtatcctgtttgagaccaaccccctggacgagagcgctaaccag
cggcttcacgtagagtcacaacccttggaaatcatctatgatgctataactgtgaacagc
atatcggcgttcttcaggcctcctgatgacatgcagctggatgagctcacgaatgcaacc
ctgatgaaactggagcagtttagagatcgcacagccactggtttactgtatgtgattgaa
acacagaaggttctcgacctgaaggtgaacttgatggcctcctacgtcatcattccacag
accggtttttacaatggcactcagaacatcttgctgttggatctcggtcatttcaagatg
tccagtcaaagcaggaaacatctacctcagctgtgtgtgagttccagcaacattgaggac
atcatgtccagagcttacgatagctttgatgtacagcttgaaagcctacagtttctttat
agcaaaccagatggtaactggaaaaaggcccgcaaacagaaacggtcacccctccacatc
ctagagccagtggatctaaaggtggtttttagcagagcaatggtcaacaaagactcccgc
atgccaaaatataagatgtctggagagcttcctctgttgtctcttcgtatttctgatgta
aaacttcgaagtgttctggagctgatggacagtatcccgctgcctgaaagcaaacctgct
gcacgtggcaatgctccatcatcaactccaaagcctaggcagtctttcacccctcatctc
actcccagaaaacctctgaactttgatcagcgctcttctctcatttttgagtcatgtgag
accatcagcatcacctcattagggtcagaggaggatctgttctatgatgcgcccagctct
cccatcggggataaaccattttttccagacaaccccatgccgctgcgctatgtcgatgca
agcaaaagaaaaagcctcatcaaggaagatgcacaaaagaacatgactgacttctttatg
acatttgagatcagtgagttttctgttcagctctgtcgtttgtctggaaatatggaggtt
acggtgctccacttagacatagagggtctgggcactgagctgaagctgcgcacctttgac
atgacgtctaatacctacttgcgagagatctgcctcaagtgtcctgaatacatggattct
gaagacaagcaagtacagctgatcaccacactggacaacaaagaagtcgatctgctcact
ctggagtatatcaaagctgacaagaatggtcccgacttcaagtctcaatataataacact
gagcagctcatcaaggtgaccttttcatccctggatgttcacctccatacggaggctctc
ctcaataccatgaacttcctcagtaagctccttcctgaatctaataagaaggaaggacag
caggaggagcttcccactatccctgaggaagacgatgctgaagcagagaaggagggagag
aagaaggaggaaactgctgtaaccaagaaaaaaccttcaaaaaggtcaaaatttgcagat
gtggttaatctgcatatcaaaactgatctccgctgccttaaagttttcattcgaggacag
aaggccaggatctcagagatcagtattgaaggtctggtttcggaggtcctgatgaggaag
aaggggatggaggtttcggccaaattgaagaatattgtgattctggactgtaacaaagaa
gctttttacaaaaaggccgtgtccatagcagataaggaagtgtttcacttccacatggta
aactatacagatgcgactgaaggagatgcctacctggacatgtctaacgttgacactact
gttacactgagtgtgggctgcattcaggtcatcttcctcaacaagtttctctcatctata
ctggagtttgtcaataacttccaggaggctaaagaggcactaactgaggtaacagttcag
gctgcggaaaaagcagcgtcaggcgtgaaagaactggctgaacggaccactcggatcgct
cttgatgtccacttcaatgcacccgtcatcttcctcccccagtcctcctcttcatcaaat
gtcattgtagctgaccttggtctgctttctatcaaaaatcgttttgccaagcaaccctgt
aaatcagatgccagcatcccacctgttgtggatataatgactgtgagactgactgacctt
aagatgtacagagtcaaatgtaaaaatgaacgttttgaagaagagatccaactgctgaag
ccagtgagcctagacttggaaatccgtagaaacttatcttccagctggtaccacgaaatt
cctgacatagctattgaggtccatctaaagcccatgagtctgctcctatgccagaatgac
atgatcattgtcctgaggactctgaacgagaacctgtcagagaagtccgatgctggtcca
cctccagctgctctgcctgccactgacccgtcctctgactctgtatccaacaaagactcc
caggaatcgggggccactggaccacccagcagtaacacagtggtgacagctgctgttgtg
gagacacagaaaaacagcaagctgaaaaagaacacgctgaaattaaacttcaagtttgac
tcattgactgtggttctgtacagctccaacgaagataagcagttagaaccacaacgtgac
cagtcacaccaacaacatgagcgatcagacccacaacatgagcgatcagacccacatgat
gagcagctgaagctagcagaatttactctgggcaccatctccacctctgtccacatgtac
tccgacagctccatgatggcctcagtagaacttgctgaatgccttctagacgacaagagg
ccaaaagccaaaagtatcacctcaaggatgatggcaatgtgtcctggtgcagaacagaac
aacatggtggaagtgagctatcgccaaacccgtgaaagcaccactttagatacagtggtg
caggatgtgtatctgtgtgccagcatggaatttctgctcacggtggccgatatcttcctt
aaggccacccagcagggttttgcccaagtgccacaacccaagaacagtgctggtcctggc
gataagaagaacattaactcatcggtcacatctaaagagtctgctacagctccagccaca
gtaacaaagacagaaatgaaagtcttggtgcgaaacccagagattgtatttgtagctgac
ctgactcgtgatgacgccccagctctggtgatgaccacatattgtgaactaaaaatggaa
aatggtgcagaaggatcacagatgactgctgttatcaaggacctcaaggttgttgcctgt
ccattcttaagacaaaagaggaaaaacaatgtgactacagtgcttcagccatgtcacgtt
gtcttcaaaagtactcagtctccaacctcccctcaggatatggaggtcaccatcaatgct
ctctcacttaaggtatctccagtcataatcaacactgtgattaccatccagtcagcactc
actccaacagcagagacccctgagaagctggacagccccgttcctgtgaacctgtgggat
aagcagagttggaaggagctcaaactctggttcctagaagaagaggacgatgaagacaca
agatcagtgacccgcttaataccacagggagagtccctaaaggtgaacatcaattcaatc
tgtgtgactctggaggctggagtgggacatcgcaccatccccatgcttctggcaaagtcc
tccttcaagggagatgtgaagaactggtccacgctcattaacttatacagtcagcttacc
ctggaggttcactattataatgaagtgatgggagtgtgggagccactgctggagccctta
gaagatgagacaagagatggtttcagaccatgggtactggaactgaagatgaaaaagaaa
cctgtgaagtacacaagcatgtcagatgaagtggattccaatatcccagactataagaca
gtcattgccatctgcagtaaagatcagctcaacatcacactttccaaatgtggactggcc
atgctgagtaacctgggcactgcatttgctgaagctgccaaacagacagcagagtgtttt
caaaaggatgaagctccatttgtagtcaaaaaccgtcttggcctaccagtttctgtgcgc
cacagtgagatgttttgtcctgtcggacaacagagtatcgctaatactgtgaagctgcag
aatggtgaatccctcggaatggactattcaaccacaacagacactgatcatttctcagca
atgacctctttgagtggaaaagactattacatacagcctactccggatggtcacacctca
gccagtgtgatccctttgatcaaagtgggccggggaatgtacagtgtaatgcacaacaac
tcaggagtcactcgtttcctggtctgtcagatttcctctgtagaaggcagcaagtacatc
aagatccgctctcctttccagctcatcaatcatttctcaataccattcaacgtttttgaa
ggatcaacccttctgggtactgctctccctgccgaggagttctgtgtgcctctggactcg
tataggtctgagctgagccttcagccagtaatagagagcacagatgaccgtcagggtgag
cagtatgattgctcagaaggcttcagttacgaggacgttaaaaacctggagcctgagaaa
cgcctacagcaaatctgccgtcgccgtggaaaccaaggtggtgtgatgaccatcaacatt
gtgccattaaaggatgcagtgacgtgcaaggagaccggagatgttggggagaattttgat
gtgccctttgtgcttcacttgtggccttccatcctgctacgcaaccttttgccttacacc
atcacctacagtctaaagaacagtggagtctctgcacctgaggctactttggaccctggt
cactctgctcagcttcacactgcagtcatcaaccagtcaagtcttgatcttcgcttgatt
gagtacttggctcaggattggtcttctgtatacagactcaacagtgatcaggaagagatc
accttcattgtgttccagtctctaagagaggatgaagacgaagatggagatgcagtggag
aggaagagggctgagctggatatagcggttcatgttaaatatgatctgggacagatggtg
gttgctatccattcaccgtactggatgataaataagacgggcaggttgctgcagtacaaa
gctgatgatattcaccgcaaacatcccatggactacaagatgccgttgctcttttcattc
aagcctcggtacttcttgcgaaacaataaggttcgtcttatgatctcagaaagtgaacta
tctgatgagttctctctggacacagttgggagccacggggatgtgaaatgcaaaggcaga
tacaaagattatctggttggtgtgaagatcgatgcaagcagtttcagtctgacccgcatt
gtgacctttgtgcccttctacatgctggtcaacagaactaagcacagtgtgttcatatgt
gaagaggggcaagaaacttggaccgaggcaaaaccagaacagtcagccatccctttctgg
cctgagagtgacactaagaagcttaaaattaaagtagaagcttccttatcgcctccagtg
actattgacttcaaacgaccagagaactgcttattgctacatctggacaacaaagtgggt
gggattatagtagacatgaatctgtctgaacactcggccactatccaattttctgactac
catgatggcgcagcccctttcctcatcatcaaccacactaaaaatcagactcttcagttc
catcagagtgtccggacagaatcctccagggtggctgacgagatacttgacctctccttc
tcagtggaggaggacagctctcagaaaaaggcggagcatgaggagctggaggctgggaaa
gctgtgtactacacctggactgagcccactgggtcacgagcgctctcctggaaatgcagc
acttacaatgggacactaaagagtgaagaggacctgcgagaggacgtaaacaaggagggc
aaactttttgtgatttccttttatgaaggtctccagcgtgttgtgctgttcactgaggag
cgacgggtcttcaagatgctctgtgacaatgagagggtgcagcttgctcaacaggaaatc
gtcctggcactacggcatgtgggcctatcgctggtgaacaacagcaccagccaagaggtt
gccttcatcgggatcacaagctctgatgttgtgtgggaattcaaacctaagaagaagagt
cggtggaaacctctgagcattaaagaagctgaagttatggaggacaagttcaaagactac
ctggaatctggggccgtagacaaggaaattttcgatctggaaaacggctttcaggtgtgc
tttaatcccactggccaggacatgcagttaatgaagccatgcgatgctcctcttaggagg
cacttcctgccgggtgtgaaggtggagtacagcatttcaccacgacagagcacctatcgt
atccaagttcaccggatacagatccagaatcagctaccaggggccatcttcccttacgtt
ttttaccctgtgaaactgccaaagtctgtcgccatggagacagaacccaaacctctaact
gatatcagcattattacccgagcagcggggcactctgatatctcacgcatcaagtacttt
atggttttaattcaggagatggatctaaaacttgatctgggcttcctgtacgccatcctg
gacctgttctccccagagaacgacagcatcacgagcgcagaacaggaggtggaactgttt
gagaaggacataacgaatataaagacagaactgaaccatgtctctgctgctgacaaatct
cccatcagcctctacgagtacttccacatttcccccattaagctgcacctgagtttctct
ctgagcacaggcggagaggatggcttgaaggagaagagagattcggaactgatccctgta
cagtcgctaaatctgttgctgaagagtatcggtgcgacgctcactgacgtgcaggatgtt
gtcttcaagctggccttttttgaattgaactaccagttctacaccactcagcagctccag
tcggaggtcctcagacattattctaagcaggctattaagcagatgtatgtgctcgtgctg
ggcctcgatgttcttggaaacccatttggactgatcagaggattgtcagaaggggtggag
gctttcttctatgagccctatcagggagccatccagggccctgaggagtttgttgaagga
atggctcttggggttaaggcgctggtgggaggagctgtaggcggtattgcaggtgcagcc
tccaggataacaggtgccatggcaaagggtgtcgcagcgatcacaatggatgaagagtac
cagcagaagagacgagaaactatgaacaaacagcccagcggtctgagagaggggctgacc
aggggtggaaaaggactggtgtctggatttgtcagtgggatcacagggatcgttaccaaa
cctattaaaggtgcccagaaagagggggcagcgggcttttttaaaggtgttggaaaaggt
ttggttggtgcagtagcccgaccaacaggaggcattattgacatggccagcagtactttc
caagggatcaagagggcggcagagacgtcacaagatattcagtctctacgtcctcctcgc
ttcatccacgaggatggtgtcatacgaccatataaggagcgggaaggcctcggcagtcag
atgcttcagaaaattgagaatggacgttttgccagctacaggtactttgctcatgctaaa
gtcaatgaatctgacttcctcatgatcaccaagaggggaatattttttgtgaccaaaggc
acttttggtcagctgacctgtgagtggcagtatctgtttgaagagttcaccaaggatcca
accattatagaggaccgccgacttcgcattgaggccaaggagagagtgaagtcagtcttt
catgccaaagagtttgggaagataataaacttcaaaactccagagatagccaaatgggtt
cttgccaaattggaggatgcacgagagagtttacctaagtactga
DBGET
integrated database retrieval system
