Oreochromis aureus (blue tilapia): 116312272
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Entry
116312272 CDS
T07295
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116312272
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oau01009
]
116312272
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oau04515
]
116312272
Protein phosphatases and associated proteins [BR:
oau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116312272
Cell adhesion molecules [BR:
oau04515
]
Cadherins
Protocadherins
116312272
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
116312272
NCBI-ProteinID:
XP_031585511
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Position
LG1:16891129..16895271
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AA seq
889 aa
AA seq
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MFNSRHPRLSKRGRLWGLCILLLYTNPLSCLANFSQAKELIYKIKEGLPRGTFIGAIGVD
LNLDFSVDPPFIFSLTQKKVSEQYVNLNNTTGELYTSATEIDRETLCADNLEGQGCVLSL
DVFVLPQQYFQLVKVKILIEDVNDNRPKFPTDEITMSVPENTPINARYAVEQSAVDPDLG
PHGVQTYWLVNDFGMFTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPQFKESQINVTLHGNTTKGVHLARLHAFDPDLGANAQISYAYS
ERVPRDTRSLFHLDKITGVIKLGGKIDTGTATFYKLTVLATGPGCIPAVATVTVHIIKVV
TGPPTVIPRYIAPEKDGVVTIKESEPAFSPIAFFTVKNIDKNQRVDCYLEGPGPFRLSPY
QLFKNEYLLETTEPLDFERTQEYDLILVANSTRGIVIKTFLKVQVLDENDNAPVFQQSLV
EISVEENNPPNTFLTQLQASDQDSESRGEVLYLLGGDAPGIFVVDRVTGILTVATSLDRE
EKETYRLIVRAVDQGTPRREAIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAGENGWVALSILNGSDIFMIDTGRGALRAKTSLDREQQGTYQLWIEAVDGGEP
ALSSVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTVPGTSITEVYAVDKDTGMNAVI
AYSIIKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREADIEVEERPWYIGQMAEGPERYEPFPCQPVLIALSVTCLGLF
FLVVTLTSYICCRRFKKNRMKRSEVEIPLKIQNDSMQVVNRKLRQISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagcagacatcctagactcagcaaaagaggaagactatggggattgtgcatc
cttttgctttacaccaaccccctttcctgtttggcaaatttcagtcaagcaaaagagctc
atctataagataaaggagggattaccaagggggacttttataggggctattggagtagat
ttaaatttggatttctctgttgaccccccctttatatttagtctcactcaaaagaaggtc
agtgaacagtatgtgaacctaaataataccaccggggagctttacacatctgctacagag
attgacagggagactctctgtgctgataacttagaggggcagggatgtgtcctctcactg
gatgtgtttgtgctgcctcaacaatactttcagcttgtcaaagtaaagattttaattgag
gatgttaatgacaacaggccaaagtttcccacggatgagatcactatgtctgtccctgaa
aacacaccaatcaatgctcgctatgcagtagagcaatcggcagttgacccagacctgggt
cctcatggagtgcaaacctactggctggttaatgactttggaatgttcacattggatgtt
gaggagaatgaaggaggtgagctgacgcctttcctcatagtgacagaagctttggaccga
gagactcaggcggaatacattaccgatataattgcagaggatggggggacccctcctcta
cttggcgctgcgactttgaaaattgtcatcacggatgtgaatgataactgtccccaattc
aaagagtcacaaattaatgtcactctgcatgggaataccaccaaaggggtacatttggca
cgtctgcatgcttttgaccctgaccttggtgctaatgctcagatcagctatgcttacagt
gaacgcgtgccaagggacaccaggagcttgttccatttggacaaaattacaggagtgatc
aagctcggagggaaaatagacactggcacagccacattttacaaactcactgttctggct
actggacctggttgtattcctgctgtagccactgttactgtccatatcatcaaagttgtc
actggaccccctactgtcataccccggtacattgcgccagaaaaagatggggtggtaaca
ataaaggaatctgaaccagctttttctccaattgctttttttactgttaaaaacattgat
aagaaccaaagggtggactgttatttagaaggacctggtcccttcaggctgagcccctat
cagctgttcaagaatgaatacctgttggagacaacagagcccttggactttgagaggaca
caggagtatgatcttattttggttgctaatagcacccgtgggatagttatcaagaccttt
cttaaagtgcaagttttggatgagaatgacaatgcccctgtgtttcagcagtctttggtg
gagatatcagttgaagaaaacaatccaccaaacacttttctcactcagctccaagcgtca
gaccaggacagcgaaagcagaggggaagttctttacctcctcggaggcgatgcccctgga
atttttgttgtggatcgagttacaggtatcctgactgtggccacatcgctggaccgtgag
gagaaagagacataccggttaatcgtgagagcggtggaccaggggacacccaggagggag
gcaattgcaacagtggtggtgaccgtgcaagatcgcaatgacaacagtccccgattcatc
aacaaggatttcactttctttgtgccagagaacttcccaggttacggtgagatcggtgtc
ctctctgtgactgatgctgatgctggggaaaatggctgggtggccctctccatcctgaat
ggcagtgacatttttatgattgacacaggccgaggggcactgagggcaaagacatcactg
gaccgggagcagcaggggacctaccagctatggattgaggctgttgatggtggggagcct
gctctctcctctgtcacaatggttaccgtgctgctgctggatgtaaatgacaacccacca
atcgtcctctttcctcagtcgaatcagtcttacatgctagtgctgcccaacactgtacca
ggaacgtcaatcacagaggtgtacgctgtggataaagatacagggatgaatgctgtgatc
gcctacagtatcattaaaaggaaaggcggtgagcccgggtcttttgccattgacccagaa
acaggaaatatcacattaaagagggagctcagcaatcgtggcctatacagccttctggtg
aaggtcagtgatcatggtcaacctgaaccgctgtactcaacagtcatggttaacttcttt
gtcaatgaaacagtgagtaatgaaagttacattcaaagtctgctgaccagagaggctgac
atagaggtagaggagaggccctggtacattggccagatggcagaggggcctgagaggtat
gagccgttcccgtgtcagcctgttctcattgctctttcagtgacgtgtctggggctgttc
ttcttggttgtcacgctgacatcttacatatgctgtaggaggtttaaaaagaacaggatg
aaaagatcagaagtggaaatacctttaaaaattcaaaatgactccatgcaggttgtgaac
agaaagctcagacagatctcaaacatctga
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